Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_R0073 and ffs are separated by 25 nucleotides ffs and DvMF_2817 are separated by 248 nucleotides DvMF_2817 and DvMF_2818 are separated by 8 nucleotides DvMF_2818 and DvMF_2819 are separated by 326 nucleotides
DvMF_R0073: DvMF_R0073 - tRNA-Ser (RefSeq), at 3,562,548 to 3,562,639
_R0073
DvMF_R0074: ffs - SRP RNA; RNA component of signal recognitionparti cle (RefSeq), at 3,562,665 to 3,562,753
ffs
DvMF_2817: DvMF_2817 - hypothetical protein (RefSeq), at 3,563,002 to 3,563,328
_2817
DvMF_2818: DvMF_2818 - methylated-DNA/protein-cysteine methyltransferase (RefSeq), at 3,563,337 to 3,563,981
_2818
DvMF_2819: DvMF_2819 - conserved hypothetical radical SAM protein (RefSeq), at 3,564,308 to 3,565,426
_2819
Position (kb)
3563
3564 Strain fitness (log2 ratio)
-1
0
1 at 3562.037 kb on - strand at 3562.091 kb on + strand at 3562.277 kb on - strand at 3562.448 kb on + strand at 3562.448 kb on + strand at 3562.466 kb on - strand at 3562.935 kb on + strand at 3563.007 kb on + strand at 3563.015 kb on - strand at 3563.015 kb on - strand at 3563.023 kb on + strand at 3563.024 kb on + strand at 3563.238 kb on + strand, within DvMF_2817 at 3563.253 kb on + strand, within DvMF_2817 at 3563.253 kb on + strand, within DvMF_2817 at 3563.261 kb on - strand, within DvMF_2817 at 3563.261 kb on - strand, within DvMF_2817 at 3563.261 kb on - strand, within DvMF_2817 at 3563.323 kb on - strand at 3563.330 kb on + strand at 3563.338 kb on - strand at 3563.501 kb on + strand, within DvMF_2818 at 3563.806 kb on - strand, within DvMF_2818 at 3563.852 kb on - strand, within DvMF_2818 at 3564.249 kb on - strand at 3564.267 kb on + strand at 3564.267 kb on + strand at 3564.275 kb on - strand at 3564.275 kb on - strand at 3564.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,562,037 - +0.1 3,562,091 + -0.3 3,562,277 - -0.4 3,562,448 + -0.4 3,562,448 + +0.0 3,562,466 - +0.2 3,562,935 + +0.1 3,563,007 + -0.4 3,563,015 - -0.4 3,563,015 - -0.6 3,563,023 + -1.2 3,563,024 + -0.3 3,563,238 + DvMF_2817 0.72 +0.1 3,563,253 + DvMF_2817 0.77 +0.1 3,563,253 + DvMF_2817 0.77 -0.5 3,563,261 - DvMF_2817 0.79 -0.3 3,563,261 - DvMF_2817 0.79 +0.6 3,563,261 - DvMF_2817 0.79 -0.0 3,563,323 - -0.3 3,563,330 + +0.5 3,563,338 - -0.6 3,563,501 + DvMF_2818 0.25 -0.9 3,563,806 - DvMF_2818 0.73 -0.5 3,563,852 - DvMF_2818 0.80 -0.4 3,564,249 - -0.0 3,564,267 + -0.1 3,564,267 + +0.2 3,564,275 - +0.1 3,564,275 - -0.2 3,564,296 - +0.3
Or see this region's nucleotide sequence