Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2446

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2445 and DvMF_2446 are separated by 479 nucleotidesDvMF_2446 and DvMF_2447 overlap by 10 nucleotides DvMF_2445: DvMF_2445 - HPP family protein (RefSeq), at 3,078,778 to 3,079,386 _2445 DvMF_2446: DvMF_2446 - phenylacetate-coenzyme A ligase, putative (RefSeq), at 3,079,866 to 3,081,131 _2446 DvMF_2447: DvMF_2447 - protein of unknown function DUF399 (RefSeq), at 3,081,122 to 3,082,807 _2447 Position (kb) 3079 3080 3081 3082Strain fitness (log2 ratio) -1 0 1at 3079.005 kb on - strand, within DvMF_2445at 3079.102 kb on - strand, within DvMF_2445at 3079.318 kb on - strand, within DvMF_2445at 3079.318 kb on - strand, within DvMF_2445at 3079.323 kb on + strand, within DvMF_2445at 3079.540 kb on + strandat 3079.589 kb on - strandat 3081.150 kb on - strandat 3081.267 kb on + strandat 3081.349 kb on - strand, within DvMF_2447at 3081.619 kb on + strand, within DvMF_2447at 3081.973 kb on - strand, within DvMF_2447at 3082.036 kb on - strand, within DvMF_2447

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,079,005 - DvMF_2445 0.37 -0.2
3,079,102 - DvMF_2445 0.53 -0.4
3,079,318 - DvMF_2445 0.89 -0.5
3,079,318 - DvMF_2445 0.89 -0.4
3,079,323 + DvMF_2445 0.89 -1.0
3,079,540 + -0.4
3,079,589 - -0.1
3,081,150 - -0.5
3,081,267 + +0.4
3,081,349 - DvMF_2447 0.13 -0.9
3,081,619 + DvMF_2447 0.29 -0.5
3,081,973 - DvMF_2447 0.50 -0.9
3,082,036 - DvMF_2447 0.54 -0.4

Or see this region's nucleotide sequence