Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2177 and DvMF_2178 are separated by 242 nucleotides DvMF_2178 and DvMF_2179 are separated by 184 nucleotides DvMF_2179 and DvMF_2180 are separated by 391 nucleotides
DvMF_2177: DvMF_2177 - Hydantoinase/oxoprolinase (RefSeq), at 2,714,835 to 2,716,832
_2177
DvMF_2178: DvMF_2178 - export-related chaperone CsaA (RefSeq), at 2,717,075 to 2,717,440
_2178
DvMF_2179: DvMF_2179 - Methyltransferase type 11 (RefSeq), at 2,717,625 to 2,718,539
_2179
DvMF_2180: DvMF_2180 - metallo-beta-lactamase/flavodoxin domain-containing protein (RefSeq), at 2,718,931 to 2,720,124
_2180
Position (kb)
2717
2718
2719 Strain fitness (log2 ratio)
-1
0
1 at 2716.641 kb on + strand at 2716.750 kb on + strand at 2716.759 kb on - strand at 2716.909 kb on - strand at 2717.091 kb on - strand at 2717.127 kb on + strand, within DvMF_2178 at 2717.322 kb on + strand, within DvMF_2178 at 2717.478 kb on + strand at 2717.756 kb on + strand, within DvMF_2179 at 2717.874 kb on - strand, within DvMF_2179 at 2718.216 kb on - strand, within DvMF_2179 at 2718.375 kb on + strand, within DvMF_2179 at 2718.721 kb on + strand at 2719.182 kb on + strand, within DvMF_2180 at 2719.360 kb on - strand, within DvMF_2180 at 2719.362 kb on - strand, within DvMF_2180 at 2719.440 kb on + strand, within DvMF_2180 at 2719.494 kb on - strand, within DvMF_2180
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,716,641 + -0.7 2,716,750 + -0.7 2,716,759 - -0.2 2,716,909 - -0.7 2,717,091 - -1.0 2,717,127 + DvMF_2178 0.14 -0.3 2,717,322 + DvMF_2178 0.67 +0.1 2,717,478 + -0.3 2,717,756 + DvMF_2179 0.14 -0.7 2,717,874 - DvMF_2179 0.27 -0.4 2,718,216 - DvMF_2179 0.65 -0.2 2,718,375 + DvMF_2179 0.82 -0.5 2,718,721 + +0.2 2,719,182 + DvMF_2180 0.21 -1.0 2,719,360 - DvMF_2180 0.36 -0.3 2,719,362 - DvMF_2180 0.36 -0.7 2,719,440 + DvMF_2180 0.43 -0.4 2,719,494 - DvMF_2180 0.47 -0.4
Or see this region's nucleotide sequence