Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1723

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1722 and DvMF_1723 are separated by 269 nucleotidesDvMF_1723 and DvMF_1724 are separated by 109 nucleotidesDvMF_1724 and DvMF_1725 are separated by 70 nucleotides DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786 _1722 DvMF_1723: DvMF_1723 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 2,108,056 to 2,108,556 _1723 DvMF_1724: DvMF_1724 - no description, at 2,108,666 to 2,108,806 _1724 DvMF_1725: DvMF_1725 - protein of unknown function UPF0150 (RefSeq), at 2,108,877 to 2,109,284 _1725 Position (kb) 2108 2109Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2107.209 kb on + strand, within DvMF_1722at 2107.273 kb on - strand, within DvMF_1722at 2107.287 kb on - strand, within DvMF_1722at 2107.867 kb on + strandat 2108.100 kb on - strandat 2108.102 kb on + strandat 2108.102 kb on + strandat 2108.102 kb on + strandat 2108.110 kb on - strand, within DvMF_1723at 2108.110 kb on - strand, within DvMF_1723at 2108.403 kb on - strand, within DvMF_1723at 2108.413 kb on - strand, within DvMF_1723at 2108.583 kb on + strandat 2108.583 kb on + strandat 2108.917 kb on + strandat 2108.958 kb on - strand, within DvMF_1725at 2108.989 kb on + strand, within DvMF_1725at 2109.034 kb on + strand, within DvMF_1725at 2109.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,107,209 + DvMF_1722 0.55 -4.2
2,107,273 - DvMF_1722 0.60 -5.6
2,107,287 - DvMF_1722 0.61 -3.2
2,107,867 + -0.2
2,108,100 - -0.3
2,108,102 + -2.4
2,108,102 + -2.7
2,108,102 + -2.0
2,108,110 - DvMF_1723 0.11 +0.7
2,108,110 - DvMF_1723 0.11 -1.5
2,108,403 - DvMF_1723 0.69 -2.7
2,108,413 - DvMF_1723 0.71 -2.2
2,108,583 + -0.6
2,108,583 + +0.1
2,108,917 + -0.9
2,108,958 - DvMF_1725 0.20 +0.7
2,108,989 + DvMF_1725 0.27 -0.8
2,109,034 + DvMF_1725 0.38 -0.7
2,109,390 - -0.1

Or see this region's nucleotide sequence