Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1629

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1628 and DvMF_1629 are separated by 84 nucleotidesDvMF_1629 and DvMF_1630 are separated by 42 nucleotides DvMF_1628: DvMF_1628 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,007,133 to 2,008,284 _1628 DvMF_1629: DvMF_1629 - ABC transporter related (RefSeq), at 2,008,369 to 2,009,316 _1629 DvMF_1630: DvMF_1630 - protein of unknown function DUF214 (RefSeq), at 2,009,359 to 2,010,507 _1630 Position (kb) 2008 2009 2010Strain fitness (log2 ratio) -1 0 1at 2007.686 kb on - strand, within DvMF_1628at 2007.765 kb on - strand, within DvMF_1628at 2007.772 kb on - strand, within DvMF_1628at 2007.799 kb on - strand, within DvMF_1628at 2008.068 kb on + strand, within DvMF_1628at 2008.428 kb on + strandat 2008.710 kb on + strand, within DvMF_1629at 2008.723 kb on + strand, within DvMF_1629at 2008.839 kb on + strand, within DvMF_1629at 2009.029 kb on - strand, within DvMF_1629at 2009.063 kb on - strand, within DvMF_1629at 2009.162 kb on - strand, within DvMF_1629at 2009.278 kb on - strandat 2009.318 kb on + strandat 2009.326 kb on - strandat 2009.331 kb on - strandat 2009.363 kb on + strandat 2009.434 kb on + strandat 2009.465 kb on - strandat 2009.585 kb on - strand, within DvMF_1630at 2009.622 kb on - strand, within DvMF_1630at 2009.863 kb on - strand, within DvMF_1630at 2009.865 kb on + strand, within DvMF_1630at 2009.921 kb on + strand, within DvMF_1630

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,007,686 - DvMF_1628 0.48 -0.8
2,007,765 - DvMF_1628 0.55 -0.3
2,007,772 - DvMF_1628 0.55 -0.3
2,007,799 - DvMF_1628 0.58 -0.5
2,008,068 + DvMF_1628 0.81 -0.3
2,008,428 + -0.6
2,008,710 + DvMF_1629 0.36 +0.5
2,008,723 + DvMF_1629 0.37 -0.5
2,008,839 + DvMF_1629 0.50 -0.5
2,009,029 - DvMF_1629 0.70 -0.0
2,009,063 - DvMF_1629 0.73 +0.0
2,009,162 - DvMF_1629 0.84 -0.3
2,009,278 - +0.1
2,009,318 + -0.5
2,009,326 - +0.1
2,009,331 - -0.6
2,009,363 + -0.3
2,009,434 + +0.2
2,009,465 - -1.0
2,009,585 - DvMF_1630 0.20 +0.1
2,009,622 - DvMF_1630 0.23 -0.5
2,009,863 - DvMF_1630 0.44 +0.6
2,009,865 + DvMF_1630 0.44 -0.4
2,009,921 + DvMF_1630 0.49 -0.4

Or see this region's nucleotide sequence