Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0288 and DvMF_0289 are separated by 73 nucleotides DvMF_0289 and glyQ are separated by 125 nucleotides
DvMF_0288: DvMF_0288 - transcriptional regulator, XRE family (RefSeq), at 331,906 to 332,943
_0288
DvMF_0289: DvMF_0289 - Recombination protein O RecO (RefSeq), at 333,017 to 334,537
_0289
DvMF_0290: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 334,663 to 335,538
glyQ
Position (kb) 333
334
335 Strain fitness (log2 ratio) -1
0
1
2 at 332.023 kb on - strand, within DvMF_0288 at 332.076 kb on + strand, within DvMF_0288 at 332.619 kb on - strand, within DvMF_0288 at 332.740 kb on + strand, within DvMF_0288 at 332.791 kb on + strand, within DvMF_0288 at 332.798 kb on + strand, within DvMF_0288 at 333.004 kb on + strand at 333.220 kb on - strand, within DvMF_0289 at 333.245 kb on - strand, within DvMF_0289 at 333.293 kb on + strand, within DvMF_0289 at 333.320 kb on + strand, within DvMF_0289 at 333.362 kb on - strand, within DvMF_0289 at 333.364 kb on + strand, within DvMF_0289 at 333.462 kb on - strand, within DvMF_0289 at 333.505 kb on - strand, within DvMF_0289 at 333.674 kb on + strand, within DvMF_0289 at 333.718 kb on - strand, within DvMF_0289 at 334.003 kb on + strand, within DvMF_0289 at 334.003 kb on + strand, within DvMF_0289 at 334.160 kb on + strand, within DvMF_0289 at 334.253 kb on - strand, within DvMF_0289 at 334.403 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 332,023 - DvMF_0288 0.11 -1.3 332,076 + DvMF_0288 0.16 +0.4 332,619 - DvMF_0288 0.69 -0.5 332,740 + DvMF_0288 0.80 -1.5 332,791 + DvMF_0288 0.85 -1.5 332,798 + DvMF_0288 0.86 -1.2 333,004 + -1.0 333,220 - DvMF_0289 0.13 -0.7 333,245 - DvMF_0289 0.15 +1.9 333,293 + DvMF_0289 0.18 -0.9 333,320 + DvMF_0289 0.20 -0.5 333,362 - DvMF_0289 0.23 -0.5 333,364 + DvMF_0289 0.23 -0.2 333,462 - DvMF_0289 0.29 -0.1 333,505 - DvMF_0289 0.32 +0.4 333,674 + DvMF_0289 0.43 -0.5 333,718 - DvMF_0289 0.46 -0.3 334,003 + DvMF_0289 0.65 -1.0 334,003 + DvMF_0289 0.65 -0.6 334,160 + DvMF_0289 0.75 -0.3 334,253 - DvMF_0289 0.81 -0.2 334,403 - +0.2
Or see this region's nucleotide sequence