Strain Fitness in Pantoea sp. MT58 around IAI47_20380

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20375 and IAI47_20380 are separated by 472 nucleotidesIAI47_20380 and IAI47_20385 are separated by 14 nucleotides IAI47_20375: IAI47_20375 - TetR family transcriptional regulator, at 314,025 to 314,600 _20375 IAI47_20380: IAI47_20380 - diaminobutyrate--2-oxoglutarate transaminase, at 315,073 to 316,458 _20380 IAI47_20385: IAI47_20385 - aspartate aminotransferase family protein, at 316,473 to 317,939 _20385 Position (kb) 315 316 317Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 314.153 kb on + strand, within IAI47_20375at 314.153 kb on + strand, within IAI47_20375at 314.153 kb on + strand, within IAI47_20375at 314.153 kb on + strand, within IAI47_20375at 314.153 kb on + strand, within IAI47_20375at 314.153 kb on + strand, within IAI47_20375at 314.153 kb on + strand, within IAI47_20375at 314.154 kb on - strand, within IAI47_20375at 314.154 kb on - strand, within IAI47_20375at 314.154 kb on - strand, within IAI47_20375at 314.157 kb on + strand, within IAI47_20375at 314.157 kb on + strand, within IAI47_20375at 314.157 kb on + strand, within IAI47_20375at 314.158 kb on - strand, within IAI47_20375at 314.158 kb on - strand, within IAI47_20375at 314.158 kb on - strand, within IAI47_20375at 314.158 kb on - strand, within IAI47_20375at 314.171 kb on + strand, within IAI47_20375at 314.172 kb on - strand, within IAI47_20375at 314.223 kb on + strand, within IAI47_20375at 314.328 kb on + strand, within IAI47_20375at 314.328 kb on + strand, within IAI47_20375at 314.329 kb on - strand, within IAI47_20375at 314.329 kb on - strand, within IAI47_20375at 314.329 kb on - strand, within IAI47_20375at 314.329 kb on - strand, within IAI47_20375at 314.329 kb on - strand, within IAI47_20375at 314.357 kb on + strand, within IAI47_20375at 314.357 kb on + strand, within IAI47_20375at 314.357 kb on + strand, within IAI47_20375at 314.357 kb on + strand, within IAI47_20375at 314.357 kb on + strand, within IAI47_20375at 314.357 kb on + strand, within IAI47_20375at 314.358 kb on - strand, within IAI47_20375at 314.367 kb on + strand, within IAI47_20375at 314.367 kb on + strand, within IAI47_20375at 314.368 kb on - strand, within IAI47_20375at 314.368 kb on - strand, within IAI47_20375at 314.462 kb on + strand, within IAI47_20375at 314.463 kb on - strand, within IAI47_20375at 314.569 kb on + strandat 314.579 kb on + strandat 314.599 kb on - strandat 314.617 kb on + strandat 314.621 kb on - strandat 314.642 kb on + strandat 314.642 kb on + strandat 314.669 kb on - strandat 314.680 kb on + strandat 314.681 kb on - strandat 314.692 kb on + strandat 314.692 kb on + strandat 314.693 kb on - strandat 314.693 kb on - strandat 314.702 kb on - strandat 314.702 kb on - strandat 314.702 kb on - strandat 314.702 kb on - strandat 314.703 kb on + strandat 314.703 kb on + strandat 314.703 kb on + strandat 314.703 kb on + strandat 314.703 kb on + strandat 314.704 kb on - strandat 314.704 kb on - strandat 314.704 kb on - strandat 314.732 kb on + strandat 314.733 kb on - strandat 314.733 kb on - strandat 314.733 kb on - strandat 314.750 kb on + strandat 314.802 kb on + strandat 314.802 kb on + strandat 314.802 kb on + strandat 314.803 kb on - strandat 314.836 kb on - strandat 314.836 kb on - strandat 314.858 kb on + strandat 314.889 kb on + strandat 314.890 kb on - strandat 314.928 kb on - strandat 314.928 kb on - strandat 314.943 kb on - strandat 314.958 kb on + strandat 314.977 kb on + strandat 314.977 kb on + strandat 314.978 kb on - strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.987 kb on + strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.988 kb on - strandat 314.989 kb on + strandat 314.990 kb on - strandat 315.004 kb on + strandat 315.004 kb on + strandat 315.005 kb on - strandat 315.005 kb on - strandat 315.008 kb on + strandat 315.008 kb on + strandat 315.008 kb on + strandat 315.008 kb on + strandat 315.008 kb on + strandat 315.009 kb on - strandat 315.009 kb on - strandat 315.009 kb on - strandat 315.021 kb on + strandat 315.022 kb on - strandat 315.030 kb on + strandat 315.031 kb on - strandat 315.046 kb on + strandat 315.047 kb on - strandat 315.063 kb on + strandat 315.064 kb on - strandat 315.064 kb on - strandat 315.072 kb on + strandat 315.072 kb on + strandat 315.072 kb on + strandat 315.072 kb on + strandat 315.072 kb on + strandat 315.072 kb on + strandat 315.072 kb on + strandat 315.073 kb on - strandat 315.073 kb on - strandat 315.073 kb on - strandat 315.073 kb on - strandat 315.073 kb on - strandat 315.073 kb on - strandat 315.073 kb on - strandat 315.093 kb on + strandat 315.099 kb on + strandat 315.099 kb on + strandat 315.139 kb on + strandat 315.139 kb on + strandat 315.140 kb on - strandat 315.140 kb on - strandat 315.143 kb on + strandat 315.143 kb on + strandat 315.143 kb on + strandat 315.181 kb on + strandat 315.181 kb on + strandat 315.181 kb on + strandat 315.231 kb on + strand, within IAI47_20380at 315.232 kb on - strand, within IAI47_20380at 315.246 kb on + strand, within IAI47_20380at 315.246 kb on + strand, within IAI47_20380at 315.246 kb on + strand, within IAI47_20380at 315.247 kb on - strand, within IAI47_20380at 315.247 kb on - strand, within IAI47_20380at 315.253 kb on + strand, within IAI47_20380at 315.253 kb on + strand, within IAI47_20380at 315.254 kb on - strand, within IAI47_20380at 315.254 kb on - strand, within IAI47_20380at 315.297 kb on + strand, within IAI47_20380at 315.297 kb on + strand, within IAI47_20380at 315.297 kb on + strand, within IAI47_20380at 315.297 kb on + strand, within IAI47_20380at 315.297 kb on + strand, within IAI47_20380at 315.298 kb on - strand, within IAI47_20380at 315.298 kb on - strand, within IAI47_20380at 315.336 kb on + strand, within IAI47_20380at 315.336 kb on + strand, within IAI47_20380at 315.337 kb on - strand, within IAI47_20380at 315.337 kb on - strand, within IAI47_20380at 315.337 kb on - strand, within IAI47_20380at 315.353 kb on + strand, within IAI47_20380at 315.353 kb on + strand, within IAI47_20380at 315.357 kb on + strand, within IAI47_20380at 315.357 kb on + strand, within IAI47_20380at 315.357 kb on + strand, within IAI47_20380at 315.357 kb on + strand, within IAI47_20380at 315.357 kb on + strand, within IAI47_20380at 315.358 kb on - strand, within IAI47_20380at 315.358 kb on - strand, within IAI47_20380at 315.358 kb on - strand, within IAI47_20380at 315.358 kb on - strand, within IAI47_20380at 315.368 kb on + strand, within IAI47_20380at 315.368 kb on + strand, within IAI47_20380at 315.372 kb on + strand, within IAI47_20380at 315.373 kb on - strand, within IAI47_20380at 315.373 kb on - strand, within IAI47_20380at 315.380 kb on + strand, within IAI47_20380at 315.400 kb on + strand, within IAI47_20380at 315.401 kb on - strand, within IAI47_20380at 315.401 kb on - strand, within IAI47_20380at 315.413 kb on + strand, within IAI47_20380at 315.413 kb on + strand, within IAI47_20380at 315.436 kb on + strand, within IAI47_20380at 315.450 kb on + strand, within IAI47_20380at 315.526 kb on - strand, within IAI47_20380at 315.544 kb on + strand, within IAI47_20380at 315.545 kb on - strand, within IAI47_20380at 315.545 kb on - strand, within IAI47_20380at 315.545 kb on - strand, within IAI47_20380at 315.552 kb on + strand, within IAI47_20380at 315.552 kb on + strand, within IAI47_20380at 315.640 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.703 kb on + strand, within IAI47_20380at 315.704 kb on - strand, within IAI47_20380at 315.704 kb on - strand, within IAI47_20380at 315.704 kb on - strand, within IAI47_20380at 315.704 kb on - strand, within IAI47_20380at 315.704 kb on - strand, within IAI47_20380at 315.704 kb on - strand, within IAI47_20380at 315.704 kb on - strand, within IAI47_20380at 315.706 kb on + strand, within IAI47_20380at 315.707 kb on - strand, within IAI47_20380at 315.707 kb on - strand, within IAI47_20380at 315.723 kb on + strand, within IAI47_20380at 315.723 kb on + strand, within IAI47_20380at 315.987 kb on - strand, within IAI47_20380at 316.101 kb on + strand, within IAI47_20380at 316.102 kb on - strand, within IAI47_20380at 316.102 kb on - strand, within IAI47_20380at 316.102 kb on - strand, within IAI47_20380at 316.104 kb on + strand, within IAI47_20380at 316.104 kb on + strand, within IAI47_20380at 316.104 kb on + strand, within IAI47_20380at 316.104 kb on + strand, within IAI47_20380at 316.104 kb on + strand, within IAI47_20380at 316.104 kb on + strand, within IAI47_20380at 316.105 kb on - strand, within IAI47_20380at 316.105 kb on - strand, within IAI47_20380at 316.105 kb on - strand, within IAI47_20380at 316.218 kb on + strand, within IAI47_20380at 316.355 kb on + strandat 316.356 kb on - strandat 316.356 kb on - strandat 316.356 kb on - strandat 316.358 kb on + strandat 316.358 kb on + strandat 316.358 kb on + strandat 316.358 kb on + strandat 316.358 kb on + strandat 316.359 kb on - strandat 316.413 kb on + strandat 316.484 kb on - strandat 316.515 kb on - strandat 316.524 kb on + strandat 316.548 kb on - strandat 316.562 kb on + strandat 316.562 kb on + strandat 316.562 kb on + strandat 316.563 kb on - strandat 316.563 kb on - strandat 316.563 kb on - strandat 316.587 kb on + strandat 316.587 kb on + strandat 316.587 kb on + strandat 316.587 kb on + strandat 316.588 kb on - strandat 316.686 kb on + strand, within IAI47_20385at 316.687 kb on - strand, within IAI47_20385at 316.687 kb on - strand, within IAI47_20385at 316.700 kb on + strand, within IAI47_20385at 316.701 kb on - strand, within IAI47_20385at 316.701 kb on - strand, within IAI47_20385at 316.881 kb on + strand, within IAI47_20385at 316.987 kb on + strand, within IAI47_20385at 317.025 kb on - strand, within IAI47_20385at 317.059 kb on + strand, within IAI47_20385at 317.060 kb on - strand, within IAI47_20385at 317.110 kb on + strand, within IAI47_20385at 317.110 kb on + strand, within IAI47_20385at 317.110 kb on + strand, within IAI47_20385at 317.344 kb on - strand, within IAI47_20385at 317.391 kb on - strand, within IAI47_20385at 317.449 kb on - strand, within IAI47_20385at 317.449 kb on - strand, within IAI47_20385

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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314,153 + IAI47_20375 0.22 -1.0
314,153 + IAI47_20375 0.22 -0.4
314,153 + IAI47_20375 0.22 -1.2
314,153 + IAI47_20375 0.22 +0.3
314,153 + IAI47_20375 0.22 -1.0
314,153 + IAI47_20375 0.22 +0.5
314,153 + IAI47_20375 0.22 -1.2
314,154 - IAI47_20375 0.22 -0.7
314,154 - IAI47_20375 0.22 -0.3
314,154 - IAI47_20375 0.22 +1.7
314,157 + IAI47_20375 0.23 -0.6
314,157 + IAI47_20375 0.23 +0.9
314,157 + IAI47_20375 0.23 +0.1
314,158 - IAI47_20375 0.23 -1.3
314,158 - IAI47_20375 0.23 +0.3
314,158 - IAI47_20375 0.23 +0.5
314,158 - IAI47_20375 0.23 -0.6
314,171 + IAI47_20375 0.25 +1.0
314,172 - IAI47_20375 0.26 +0.7
314,223 + IAI47_20375 0.34 +1.6
314,328 + IAI47_20375 0.53 +0.0
314,328 + IAI47_20375 0.53 +0.9
314,329 - IAI47_20375 0.53 -0.3
314,329 - IAI47_20375 0.53 -1.2
314,329 - IAI47_20375 0.53 +1.9
314,329 - IAI47_20375 0.53 -0.3
314,329 - IAI47_20375 0.53 -0.5
314,357 + IAI47_20375 0.58 +0.9
314,357 + IAI47_20375 0.58 +1.8
314,357 + IAI47_20375 0.58 +0.4
314,357 + IAI47_20375 0.58 +0.6
314,357 + IAI47_20375 0.58 -1.4
314,357 + IAI47_20375 0.58 +1.2
314,358 - IAI47_20375 0.58 +1.6
314,367 + IAI47_20375 0.59 +0.2
314,367 + IAI47_20375 0.59 -0.0
314,368 - IAI47_20375 0.60 +0.0
314,368 - IAI47_20375 0.60 +0.8
314,462 + IAI47_20375 0.76 +0.8
314,463 - IAI47_20375 0.76 +0.5
314,569 + +1.7
314,579 + +0.7
314,599 - -0.9
314,617 + +0.4
314,621 - +0.0
314,642 + +1.3
314,642 + -1.3
314,669 - -0.4
314,680 + +0.6
314,681 - -1.8
314,692 + +1.2
314,692 + -1.1
314,693 - +0.3
314,693 - +2.0
314,702 - +1.0
314,702 - +1.2
314,702 - +0.7
314,702 - -0.4
314,703 + -2.3
314,703 + -2.0
314,703 + +1.6
314,703 + +0.7
314,703 + -0.7
314,704 - -1.1
314,704 - +0.8
314,704 - +0.1
314,732 + +1.2
314,733 - -0.1
314,733 - -1.0
314,733 - +1.0
314,750 + -0.0
314,802 + -1.5
314,802 + +1.5
314,802 + -1.8
314,803 - +0.4
314,836 - +0.1
314,836 - -1.1
314,858 + -0.0
314,889 + -0.3
314,890 - +0.8
314,928 - +0.4
314,928 - +0.5
314,943 - +0.3
314,958 + +1.6
314,977 + +2.3
314,977 + -0.2
314,978 - +0.6
314,987 + -1.1
314,987 + +0.2
314,987 + +0.3
314,987 + -0.3
314,987 + +0.3
314,987 + -0.0
314,987 + +0.6
314,987 + +2.7
314,987 + +1.4
314,987 + +2.1
314,988 - -1.1
314,988 - -1.6
314,988 - -0.3
314,988 - -1.7
314,988 - -0.8
314,988 - +0.5
314,988 - -0.7
314,988 - +0.2
314,988 - +0.2
314,988 - -1.3
314,989 + +0.2
314,990 - -1.2
315,004 + +1.5
315,004 + +0.7
315,005 - +0.4
315,005 - -2.1
315,008 + +1.3
315,008 + -0.7
315,008 + -0.8
315,008 + +1.0
315,008 + +1.6
315,009 - -1.7
315,009 - +0.7
315,009 - +1.0
315,021 + +1.5
315,022 - +0.5
315,030 + -0.1
315,031 - -0.3
315,046 + -1.0
315,047 - +1.0
315,063 + +1.4
315,064 - +0.2
315,064 - -0.1
315,072 + +0.4
315,072 + +0.4
315,072 + +0.5
315,072 + +0.1
315,072 + +0.6
315,072 + +1.3
315,072 + +4.5
315,073 - +0.5
315,073 - +2.0
315,073 - -0.7
315,073 - -0.3
315,073 - +0.5
315,073 - +2.0
315,073 - -0.9
315,093 + -0.4
315,099 + +1.4
315,099 + +3.6
315,139 + +1.9
315,139 + +0.6
315,140 - +0.5
315,140 - -0.5
315,143 + +0.5
315,143 + +0.2
315,143 + +2.0
315,181 + +1.3
315,181 + -0.6
315,181 + -0.2
315,231 + IAI47_20380 0.11 +1.3
315,232 - IAI47_20380 0.11 -0.6
315,246 + IAI47_20380 0.12 -0.0
315,246 + IAI47_20380 0.12 -0.2
315,246 + IAI47_20380 0.12 +2.2
315,247 - IAI47_20380 0.13 -0.6
315,247 - IAI47_20380 0.13 -0.5
315,253 + IAI47_20380 0.13 -0.0
315,253 + IAI47_20380 0.13 -1.7
315,254 - IAI47_20380 0.13 +1.7
315,254 - IAI47_20380 0.13 -1.3
315,297 + IAI47_20380 0.16 +1.5
315,297 + IAI47_20380 0.16 -1.3
315,297 + IAI47_20380 0.16 +0.2
315,297 + IAI47_20380 0.16 +0.1
315,297 + IAI47_20380 0.16 +0.8
315,298 - IAI47_20380 0.16 -0.2
315,298 - IAI47_20380 0.16 -0.1
315,336 + IAI47_20380 0.19 +0.8
315,336 + IAI47_20380 0.19 +1.0
315,337 - IAI47_20380 0.19 -1.1
315,337 - IAI47_20380 0.19 -1.6
315,337 - IAI47_20380 0.19 -2.4
315,353 + IAI47_20380 0.20 +1.0
315,353 + IAI47_20380 0.20 -0.4
315,357 + IAI47_20380 0.20 +0.7
315,357 + IAI47_20380 0.20 +1.4
315,357 + IAI47_20380 0.20 +0.7
315,357 + IAI47_20380 0.20 -1.6
315,357 + IAI47_20380 0.20 +0.8
315,358 - IAI47_20380 0.21 -0.7
315,358 - IAI47_20380 0.21 -1.6
315,358 - IAI47_20380 0.21 -0.9
315,358 - IAI47_20380 0.21 -0.4
315,368 + IAI47_20380 0.21 +1.4
315,368 + IAI47_20380 0.21 +0.7
315,372 + IAI47_20380 0.22 +0.6
315,373 - IAI47_20380 0.22 +0.2
315,373 - IAI47_20380 0.22 -0.6
315,380 + IAI47_20380 0.22 +0.1
315,400 + IAI47_20380 0.24 +2.6
315,401 - IAI47_20380 0.24 -1.1
315,401 - IAI47_20380 0.24 -0.3
315,413 + IAI47_20380 0.25 +1.9
315,413 + IAI47_20380 0.25 +0.1
315,436 + IAI47_20380 0.26 +3.6
315,450 + IAI47_20380 0.27 -0.1
315,526 - IAI47_20380 0.33 -0.0
315,544 + IAI47_20380 0.34 -0.0
315,545 - IAI47_20380 0.34 +0.7
315,545 - IAI47_20380 0.34 -0.7
315,545 - IAI47_20380 0.34 -0.3
315,552 + IAI47_20380 0.35 +1.5
315,552 + IAI47_20380 0.35 +1.8
315,640 + IAI47_20380 0.41 +2.9
315,703 + IAI47_20380 0.45 -1.2
315,703 + IAI47_20380 0.45 +0.5
315,703 + IAI47_20380 0.45 +0.8
315,703 + IAI47_20380 0.45 +2.0
315,703 + IAI47_20380 0.45 -0.3
315,703 + IAI47_20380 0.45 +2.0
315,703 + IAI47_20380 0.45 +1.2
315,703 + IAI47_20380 0.45 +1.4
315,703 + IAI47_20380 0.45 +0.7
315,703 + IAI47_20380 0.45 +1.0
315,704 - IAI47_20380 0.46 +0.6
315,704 - IAI47_20380 0.46 +0.4
315,704 - IAI47_20380 0.46 +0.8
315,704 - IAI47_20380 0.46 -0.5
315,704 - IAI47_20380 0.46 -0.2
315,704 - IAI47_20380 0.46 -1.4
315,704 - IAI47_20380 0.46 -0.0
315,706 + IAI47_20380 0.46 +4.7
315,707 - IAI47_20380 0.46 +0.4
315,707 - IAI47_20380 0.46 -1.9
315,723 + IAI47_20380 0.47 +1.7
315,723 + IAI47_20380 0.47 +2.2
315,987 - IAI47_20380 0.66 -1.0
316,101 + IAI47_20380 0.74 -0.4
316,102 - IAI47_20380 0.74 +0.0
316,102 - IAI47_20380 0.74 -0.9
316,102 - IAI47_20380 0.74 +1.0
316,104 + IAI47_20380 0.74 +0.8
316,104 + IAI47_20380 0.74 +0.3
316,104 + IAI47_20380 0.74 +2.3
316,104 + IAI47_20380 0.74 +0.6
316,104 + IAI47_20380 0.74 +2.2
316,104 + IAI47_20380 0.74 +1.0
316,105 - IAI47_20380 0.74 -0.7
316,105 - IAI47_20380 0.74 +1.5
316,105 - IAI47_20380 0.74 -1.0
316,218 + IAI47_20380 0.83 +1.8
316,355 + +0.3
316,356 - +0.0
316,356 - -1.3
316,356 - -0.5
316,358 + +2.9
316,358 + +0.7
316,358 + -0.3
316,358 + +0.4
316,358 + +0.9
316,359 - -0.9
316,413 + +1.4
316,484 - -0.7
316,515 - -0.4
316,524 + +0.7
316,548 - +0.1
316,562 + +1.3
316,562 + +0.1
316,562 + +0.8
316,563 - -0.8
316,563 - -0.2
316,563 - +0.0
316,587 + +1.2
316,587 + +2.1
316,587 + +1.0
316,587 + +0.7
316,588 - -1.4
316,686 + IAI47_20385 0.15 -1.0
316,687 - IAI47_20385 0.15 +0.1
316,687 - IAI47_20385 0.15 -0.2
316,700 + IAI47_20385 0.15 +1.3
316,701 - IAI47_20385 0.16 -0.4
316,701 - IAI47_20385 0.16 -0.7
316,881 + IAI47_20385 0.28 +1.5
316,987 + IAI47_20385 0.35 -0.5
317,025 - IAI47_20385 0.38 -0.0
317,059 + IAI47_20385 0.40 +3.0
317,060 - IAI47_20385 0.40 +0.6
317,110 + IAI47_20385 0.43 +0.7
317,110 + IAI47_20385 0.43 +1.0
317,110 + IAI47_20385 0.43 +0.2
317,344 - IAI47_20385 0.59 -1.0
317,391 - IAI47_20385 0.63 -1.8
317,449 - IAI47_20385 0.67 -1.6
317,449 - IAI47_20385 0.67 +1.7

Or see this region's nucleotide sequence