Strain Fitness in Pantoea sp. MT58 around IAI47_06445

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06440 and IAI47_06445 are separated by 139 nucleotidesIAI47_06445 and IAI47_06450 are separated by 2 nucleotides IAI47_06440: IAI47_06440 - nicotinamide mononucleotide deamidase-related protein YfaY, at 1,312,177 to 1,313,373 _06440 IAI47_06445: IAI47_06445 - 2Fe-2S ferredoxin-like protein, at 1,313,513 to 1,313,773 _06445 IAI47_06450: IAI47_06450 - ribonucleotide-diphosphate reductase subunit beta, at 1,313,776 to 1,314,906 _06450 Position (kb) 1313 1314Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1312.564 kb on - strand, within IAI47_06440at 1312.617 kb on - strand, within IAI47_06440at 1312.647 kb on + strand, within IAI47_06440at 1312.647 kb on + strand, within IAI47_06440at 1312.647 kb on + strand, within IAI47_06440at 1312.755 kb on + strand, within IAI47_06440at 1312.807 kb on + strand, within IAI47_06440at 1312.807 kb on + strand, within IAI47_06440at 1312.901 kb on + strand, within IAI47_06440at 1312.901 kb on + strand, within IAI47_06440at 1312.902 kb on - strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.917 kb on + strand, within IAI47_06440at 1312.918 kb on - strand, within IAI47_06440at 1312.918 kb on - strand, within IAI47_06440at 1312.918 kb on - strand, within IAI47_06440at 1312.918 kb on - strand, within IAI47_06440at 1313.002 kb on + strand, within IAI47_06440at 1313.002 kb on + strand, within IAI47_06440at 1313.002 kb on + strand, within IAI47_06440at 1313.002 kb on + strand, within IAI47_06440at 1313.003 kb on - strand, within IAI47_06440at 1313.003 kb on - strand, within IAI47_06440at 1313.003 kb on - strand, within IAI47_06440at 1313.003 kb on - strand, within IAI47_06440at 1313.020 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.192 kb on + strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.193 kb on - strand, within IAI47_06440at 1313.196 kb on + strand, within IAI47_06440at 1313.196 kb on + strand, within IAI47_06440at 1313.196 kb on + strand, within IAI47_06440at 1313.196 kb on + strand, within IAI47_06440at 1313.197 kb on - strand, within IAI47_06440at 1313.197 kb on - strand, within IAI47_06440at 1313.247 kb on + strand, within IAI47_06440at 1313.248 kb on - strand, within IAI47_06440at 1313.248 kb on - strand, within IAI47_06440at 1313.292 kb on + strandat 1313.292 kb on + strandat 1313.292 kb on + strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.293 kb on - strandat 1313.310 kb on - strandat 1313.310 kb on - strandat 1313.356 kb on - strandat 1313.415 kb on + strandat 1313.415 kb on + strandat 1313.415 kb on + strandat 1313.415 kb on + strandat 1313.416 kb on - strandat 1313.416 kb on - strandat 1313.416 kb on - strandat 1313.416 kb on - strandat 1313.459 kb on + strandat 1313.459 kb on + strandat 1313.459 kb on + strandat 1313.460 kb on - strandat 1313.460 kb on - strandat 1313.460 kb on - strandat 1313.460 kb on - strandat 1313.460 kb on - strandat 1313.463 kb on + strandat 1313.463 kb on + strandat 1313.463 kb on + strandat 1313.463 kb on + strandat 1313.464 kb on - strandat 1313.464 kb on - strandat 1313.464 kb on - strandat 1313.464 kb on - strandat 1313.479 kb on - strandat 1313.479 kb on - strandat 1313.514 kb on + strandat 1313.514 kb on + strandat 1313.514 kb on + strandat 1313.515 kb on - strandat 1313.515 kb on - strandat 1313.515 kb on - strandat 1313.515 kb on - strandat 1313.516 kb on + strandat 1313.516 kb on + strandat 1313.516 kb on + strandat 1313.516 kb on + strandat 1313.517 kb on - strandat 1313.517 kb on - strandat 1313.517 kb on - strandat 1313.517 kb on - strandat 1313.517 kb on - strandat 1313.539 kb on + strand, within IAI47_06445at 1313.601 kb on + strand, within IAI47_06445at 1313.601 kb on + strand, within IAI47_06445at 1313.680 kb on + strand, within IAI47_06445at 1313.680 kb on + strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.681 kb on - strand, within IAI47_06445at 1313.755 kb on + strandat 1313.755 kb on + strandat 1313.756 kb on - strandat 1313.756 kb on - strandat 1313.756 kb on - strandat 1313.777 kb on + strandat 1313.778 kb on - strandat 1313.778 kb on - strandat 1313.958 kb on + strand, within IAI47_06450at 1313.976 kb on - strand, within IAI47_06450at 1314.039 kb on - strand, within IAI47_06450at 1314.039 kb on - strand, within IAI47_06450at 1314.163 kb on - strand, within IAI47_06450at 1314.163 kb on - strand, within IAI47_06450at 1314.279 kb on - strand, within IAI47_06450at 1314.322 kb on - strand, within IAI47_06450at 1314.323 kb on + strand, within IAI47_06450at 1314.323 kb on + strand, within IAI47_06450at 1314.323 kb on + strand, within IAI47_06450at 1314.324 kb on - strand, within IAI47_06450at 1314.324 kb on - strand, within IAI47_06450at 1314.324 kb on - strand, within IAI47_06450at 1314.379 kb on - strand, within IAI47_06450at 1314.379 kb on - strand, within IAI47_06450at 1314.448 kb on - strand, within IAI47_06450at 1314.448 kb on - strand, within IAI47_06450at 1314.500 kb on - strand, within IAI47_06450at 1314.539 kb on + strand, within IAI47_06450at 1314.540 kb on - strand, within IAI47_06450at 1314.540 kb on - strand, within IAI47_06450at 1314.685 kb on - strand, within IAI47_06450at 1314.691 kb on - strand, within IAI47_06450

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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1,312,564 - IAI47_06440 0.32 -0.1
1,312,617 - IAI47_06440 0.37 +1.6
1,312,647 + IAI47_06440 0.39 -0.0
1,312,647 + IAI47_06440 0.39 -1.0
1,312,647 + IAI47_06440 0.39 +0.8
1,312,755 + IAI47_06440 0.48 +2.4
1,312,807 + IAI47_06440 0.53 +0.0
1,312,807 + IAI47_06440 0.53 -0.9
1,312,901 + IAI47_06440 0.60 -0.0
1,312,901 + IAI47_06440 0.60 +1.1
1,312,902 - IAI47_06440 0.61 +0.6
1,312,917 + IAI47_06440 0.62 -0.3
1,312,917 + IAI47_06440 0.62 -0.3
1,312,917 + IAI47_06440 0.62 +1.3
1,312,917 + IAI47_06440 0.62 +1.4
1,312,917 + IAI47_06440 0.62 +0.5
1,312,918 - IAI47_06440 0.62 -1.0
1,312,918 - IAI47_06440 0.62 +0.2
1,312,918 - IAI47_06440 0.62 -1.3
1,312,918 - IAI47_06440 0.62 +0.0
1,313,002 + IAI47_06440 0.69 +0.7
1,313,002 + IAI47_06440 0.69 -0.2
1,313,002 + IAI47_06440 0.69 +0.5
1,313,002 + IAI47_06440 0.69 +1.0
1,313,003 - IAI47_06440 0.69 +0.7
1,313,003 - IAI47_06440 0.69 -1.2
1,313,003 - IAI47_06440 0.69 -1.7
1,313,003 - IAI47_06440 0.69 -1.4
1,313,020 + IAI47_06440 0.70 +0.3
1,313,192 + IAI47_06440 0.85 +0.5
1,313,192 + IAI47_06440 0.85 -1.2
1,313,192 + IAI47_06440 0.85 +0.2
1,313,192 + IAI47_06440 0.85 -0.8
1,313,192 + IAI47_06440 0.85 -0.7
1,313,192 + IAI47_06440 0.85 -1.4
1,313,192 + IAI47_06440 0.85 +1.3
1,313,192 + IAI47_06440 0.85 -0.3
1,313,192 + IAI47_06440 0.85 +1.3
1,313,192 + IAI47_06440 0.85 +0.1
1,313,192 + IAI47_06440 0.85 -0.4
1,313,193 - IAI47_06440 0.85 -1.3
1,313,193 - IAI47_06440 0.85 +0.0
1,313,193 - IAI47_06440 0.85 +0.2
1,313,193 - IAI47_06440 0.85 +1.3
1,313,193 - IAI47_06440 0.85 +0.4
1,313,193 - IAI47_06440 0.85 -0.1
1,313,196 + IAI47_06440 0.85 +0.9
1,313,196 + IAI47_06440 0.85 +1.3
1,313,196 + IAI47_06440 0.85 +0.1
1,313,196 + IAI47_06440 0.85 +0.4
1,313,197 - IAI47_06440 0.85 +0.5
1,313,197 - IAI47_06440 0.85 -1.6
1,313,247 + IAI47_06440 0.89 -1.2
1,313,248 - IAI47_06440 0.89 +0.6
1,313,248 - IAI47_06440 0.89 -1.3
1,313,292 + +0.0
1,313,292 + +0.5
1,313,292 + -0.5
1,313,293 - -0.3
1,313,293 - -1.5
1,313,293 - -0.5
1,313,293 - -1.1
1,313,293 - -0.5
1,313,293 - -0.3
1,313,293 - +4.0
1,313,310 - +0.4
1,313,310 - -0.8
1,313,356 - -1.1
1,313,415 + +0.1
1,313,415 + -1.3
1,313,415 + -0.2
1,313,415 + -2.1
1,313,416 - -0.3
1,313,416 - +1.7
1,313,416 - +0.2
1,313,416 - +0.1
1,313,459 + -2.5
1,313,459 + -1.0
1,313,459 + -0.2
1,313,460 - -1.7
1,313,460 - +1.3
1,313,460 - +0.3
1,313,460 - +1.0
1,313,460 - +0.3
1,313,463 + -0.2
1,313,463 + +0.3
1,313,463 + -0.3
1,313,463 + +0.3
1,313,464 - -0.6
1,313,464 - +0.5
1,313,464 - +1.5
1,313,464 - +0.7
1,313,479 - -0.1
1,313,479 - +0.4
1,313,514 + -0.7
1,313,514 + +1.5
1,313,514 + +0.3
1,313,515 - -1.1
1,313,515 - +1.3
1,313,515 - -0.4
1,313,515 - -1.0
1,313,516 + -0.2
1,313,516 + -1.9
1,313,516 + -0.9
1,313,516 + -1.6
1,313,517 - +1.7
1,313,517 - -0.9
1,313,517 - +0.1
1,313,517 - +0.1
1,313,517 - +1.0
1,313,539 + IAI47_06445 0.10 +0.6
1,313,601 + IAI47_06445 0.34 -0.2
1,313,601 + IAI47_06445 0.34 +0.0
1,313,680 + IAI47_06445 0.64 +0.1
1,313,680 + IAI47_06445 0.64 -0.1
1,313,681 - IAI47_06445 0.64 +0.9
1,313,681 - IAI47_06445 0.64 +4.1
1,313,681 - IAI47_06445 0.64 +0.9
1,313,681 - IAI47_06445 0.64 -0.3
1,313,681 - IAI47_06445 0.64 +1.4
1,313,755 + +1.2
1,313,755 + -0.7
1,313,756 - -2.3
1,313,756 - +2.1
1,313,756 - +0.7
1,313,777 + -1.7
1,313,778 - -0.6
1,313,778 - -1.2
1,313,958 + IAI47_06450 0.16 +1.4
1,313,976 - IAI47_06450 0.18 +0.6
1,314,039 - IAI47_06450 0.23 +1.6
1,314,039 - IAI47_06450 0.23 +0.5
1,314,163 - IAI47_06450 0.34 -0.3
1,314,163 - IAI47_06450 0.34 +0.2
1,314,279 - IAI47_06450 0.44 -0.1
1,314,322 - IAI47_06450 0.48 +1.9
1,314,323 + IAI47_06450 0.48 -2.6
1,314,323 + IAI47_06450 0.48 +1.0
1,314,323 + IAI47_06450 0.48 +0.0
1,314,324 - IAI47_06450 0.48 +0.0
1,314,324 - IAI47_06450 0.48 -0.1
1,314,324 - IAI47_06450 0.48 +1.3
1,314,379 - IAI47_06450 0.53 -0.4
1,314,379 - IAI47_06450 0.53 +1.1
1,314,448 - IAI47_06450 0.59 -0.1
1,314,448 - IAI47_06450 0.59 +2.6
1,314,500 - IAI47_06450 0.64 -0.5
1,314,539 + IAI47_06450 0.67 -0.4
1,314,540 - IAI47_06450 0.68 +0.2
1,314,540 - IAI47_06450 0.68 +0.1
1,314,685 - IAI47_06450 0.80 +0.7
1,314,691 - IAI47_06450 0.81 +2.3

Or see this region's nucleotide sequence