Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05960 and H281DRAFT_05961 are separated by 22 nucleotides H281DRAFT_05961 and H281DRAFT_05962 overlap by 1 nucleotides H281DRAFT_05962 and H281DRAFT_05963 are separated by 165 nucleotides
H281DRAFT_05960: H281DRAFT_05960 - gluconolactonase (EC 3.1.1.17), at 101,724 to 102,653
_05960
H281DRAFT_05961: H281DRAFT_05961 - D-3-phosphoglycerate dehydrogenase, at 102,676 to 103,623
_05961
H281DRAFT_05962: H281DRAFT_05962 - RraA famliy, at 103,623 to 104,321
_05962
H281DRAFT_05963: H281DRAFT_05963 - transcriptional regulator, IclR family, at 104,487 to 105,197
_05963
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 102.646 kb on + strand at 102.646 kb on + strand at 102.647 kb on - strand at 102.749 kb on + strand at 102.821 kb on + strand, within H281DRAFT_05961 at 103.792 kb on - strand, within H281DRAFT_05962 at 104.312 kb on + strand at 104.313 kb on - strand at 104.313 kb on - strand at 104.386 kb on - strand at 104.697 kb on + strand, within H281DRAFT_05963 at 104.697 kb on + strand, within H281DRAFT_05963 at 104.712 kb on + strand, within H281DRAFT_05963 at 104.712 kb on + strand, within H281DRAFT_05963 at 104.793 kb on + strand, within H281DRAFT_05963 at 104.796 kb on + strand, within H281DRAFT_05963
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 102,646 + +1.4 102,646 + +0.7 102,647 - +0.3 102,749 + +0.5 102,821 + H281DRAFT_05961 0.15 -0.1 103,792 - H281DRAFT_05962 0.24 +0.6 104,312 + +0.9 104,313 - +0.1 104,313 - -0.2 104,386 - +0.4 104,697 + H281DRAFT_05963 0.30 -0.2 104,697 + H281DRAFT_05963 0.30 -0.8 104,712 + H281DRAFT_05963 0.32 -2.2 104,712 + H281DRAFT_05963 0.32 -0.4 104,793 + H281DRAFT_05963 0.43 -0.5 104,796 + H281DRAFT_05963 0.43 -1.0
Or see this region's nucleotide sequence