Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05807

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05806 and H281DRAFT_05807 overlap by 8 nucleotidesH281DRAFT_05807 and H281DRAFT_05808 are separated by 13 nucleotides H281DRAFT_05806: H281DRAFT_05806 - dipeptide transport system ATP-binding protein, at 82,049 to 83,068 _05806 H281DRAFT_05807: H281DRAFT_05807 - hypothetical protein, at 83,061 to 84,233 _05807 H281DRAFT_05808: H281DRAFT_05808 - Tfp pilus assembly protein PilF, at 84,247 to 85,980 _05808 Position (kb) 83 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 82.131 kb on - strandat 82.465 kb on - strand, within H281DRAFT_05806at 82.543 kb on + strand, within H281DRAFT_05806at 82.543 kb on + strand, within H281DRAFT_05806at 82.544 kb on - strand, within H281DRAFT_05806at 82.644 kb on + strand, within H281DRAFT_05806at 82.706 kb on + strand, within H281DRAFT_05806at 82.706 kb on + strand, within H281DRAFT_05806at 82.706 kb on + strand, within H281DRAFT_05806at 82.707 kb on - strand, within H281DRAFT_05806at 82.707 kb on - strand, within H281DRAFT_05806at 82.707 kb on - strand, within H281DRAFT_05806at 82.707 kb on - strand, within H281DRAFT_05806at 82.744 kb on + strand, within H281DRAFT_05806at 82.745 kb on - strand, within H281DRAFT_05806at 82.769 kb on + strand, within H281DRAFT_05806at 82.770 kb on - strand, within H281DRAFT_05806at 82.770 kb on - strand, within H281DRAFT_05806at 82.770 kb on - strand, within H281DRAFT_05806at 82.770 kb on - strand, within H281DRAFT_05806at 82.833 kb on - strand, within H281DRAFT_05806at 82.965 kb on - strand, within H281DRAFT_05806at 83.193 kb on + strand, within H281DRAFT_05807at 83.246 kb on + strand, within H281DRAFT_05807at 83.246 kb on + strand, within H281DRAFT_05807at 83.246 kb on + strand, within H281DRAFT_05807at 83.246 kb on + strand, within H281DRAFT_05807at 83.408 kb on + strand, within H281DRAFT_05807at 83.418 kb on + strand, within H281DRAFT_05807at 83.438 kb on + strand, within H281DRAFT_05807at 83.448 kb on + strand, within H281DRAFT_05807at 83.448 kb on + strand, within H281DRAFT_05807at 83.449 kb on - strand, within H281DRAFT_05807at 83.449 kb on - strand, within H281DRAFT_05807at 83.575 kb on + strand, within H281DRAFT_05807at 83.575 kb on + strand, within H281DRAFT_05807at 83.576 kb on - strand, within H281DRAFT_05807at 83.604 kb on + strand, within H281DRAFT_05807at 83.605 kb on - strand, within H281DRAFT_05807at 83.751 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strandat 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.813 kb on - strandat 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.815 kb on - strand, within H281DRAFT_05807at 83.815 kb on - strand, within H281DRAFT_05807at 83.924 kb on + strand, within H281DRAFT_05807at 83.924 kb on + strandat 83.925 kb on - strand, within H281DRAFT_05807at 84.248 kb on + strandat 84.768 kb on - strand, within H281DRAFT_05808at 84.768 kb on - strand, within H281DRAFT_05808at 84.845 kb on + strand, within H281DRAFT_05808at 84.846 kb on - strand, within H281DRAFT_05808at 84.876 kb on + strand, within H281DRAFT_05808at 84.877 kb on - strand, within H281DRAFT_05808at 84.880 kb on + strand, within H281DRAFT_05808at 84.880 kb on + strand, within H281DRAFT_05808at 84.934 kb on + strand, within H281DRAFT_05808at 85.093 kb on - strand, within H281DRAFT_05808at 85.211 kb on + strand, within H281DRAFT_05808at 85.212 kb on - strand, within H281DRAFT_05808

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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82,131 - +0.8
82,465 - H281DRAFT_05806 0.41 +0.4
82,543 + H281DRAFT_05806 0.48 +0.1
82,543 + H281DRAFT_05806 0.48 -1.1
82,544 - H281DRAFT_05806 0.49 -0.5
82,644 + H281DRAFT_05806 0.58 -0.3
82,706 + H281DRAFT_05806 0.64 -0.2
82,706 + H281DRAFT_05806 0.64 +0.2
82,706 + H281DRAFT_05806 0.64 +0.5
82,707 - H281DRAFT_05806 0.65 +2.1
82,707 - H281DRAFT_05806 0.65 +1.2
82,707 - H281DRAFT_05806 0.65 -0.0
82,707 - H281DRAFT_05806 0.65 -0.4
82,744 + H281DRAFT_05806 0.68 +0.2
82,745 - H281DRAFT_05806 0.68 +2.5
82,769 + H281DRAFT_05806 0.71 +0.5
82,770 - H281DRAFT_05806 0.71 +0.5
82,770 - H281DRAFT_05806 0.71 -0.5
82,770 - H281DRAFT_05806 0.71 +0.8
82,770 - H281DRAFT_05806 0.71 +0.6
82,833 - H281DRAFT_05806 0.77 +1.4
82,965 - H281DRAFT_05806 0.90 +0.8
83,193 + H281DRAFT_05807 0.11 +0.2
83,246 + H281DRAFT_05807 0.16 +0.9
83,246 + H281DRAFT_05807 0.16 +0.2
83,246 + H281DRAFT_05807 0.16 +1.3
83,246 + H281DRAFT_05807 0.16 +1.3
83,408 + H281DRAFT_05807 0.30 +0.4
83,418 + H281DRAFT_05807 0.30 +1.2
83,438 + H281DRAFT_05807 0.32 +0.5
83,448 + H281DRAFT_05807 0.33 +1.6
83,448 + H281DRAFT_05807 0.33 +0.9
83,449 - H281DRAFT_05807 0.33 +0.5
83,449 - H281DRAFT_05807 0.33 +0.7
83,575 + H281DRAFT_05807 0.44 +1.0
83,575 + H281DRAFT_05807 0.44 +0.9
83,576 - H281DRAFT_05807 0.44 +0.8
83,604 + H281DRAFT_05807 0.46 +0.5
83,605 - H281DRAFT_05807 0.46 +1.0
83,751 + H281DRAFT_05807 0.59 +0.2
83,812 + +1.2
83,812 + H281DRAFT_05807 0.64 +0.6
83,812 + H281DRAFT_05807 0.64 +0.8
83,812 + H281DRAFT_05807 0.64 +0.6
83,812 + H281DRAFT_05807 0.64 +0.9
83,812 + H281DRAFT_05807 0.64 -0.3
83,812 + H281DRAFT_05807 0.64 +1.1
83,813 - +1.3
83,813 - H281DRAFT_05807 0.64 +1.2
83,813 - H281DRAFT_05807 0.64 -0.0
83,813 - H281DRAFT_05807 0.64 +0.9
83,813 - H281DRAFT_05807 0.64 +0.9
83,815 - H281DRAFT_05807 0.64 +1.2
83,815 - H281DRAFT_05807 0.64 +1.0
83,924 + H281DRAFT_05807 0.74 +1.2
83,924 + -0.1
83,925 - H281DRAFT_05807 0.74 +1.3
84,248 + +0.1
84,768 - H281DRAFT_05808 0.30 +0.2
84,768 - H281DRAFT_05808 0.30 -0.4
84,845 + H281DRAFT_05808 0.34 +0.9
84,846 - H281DRAFT_05808 0.35 +0.3
84,876 + H281DRAFT_05808 0.36 -0.0
84,877 - H281DRAFT_05808 0.36 +0.7
84,880 + H281DRAFT_05808 0.37 +0.6
84,880 + H281DRAFT_05808 0.37 -2.8
84,934 + H281DRAFT_05808 0.40 -0.3
85,093 - H281DRAFT_05808 0.49 +1.5
85,211 + H281DRAFT_05808 0.56 +1.7
85,212 - H281DRAFT_05808 0.56 -0.2

Or see this region's nucleotide sequence