Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05610

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05609 and H281DRAFT_05610 are separated by 254 nucleotidesH281DRAFT_05610 and H281DRAFT_05611 overlap by 4 nucleotidesH281DRAFT_05611 and H281DRAFT_05612 overlap by 4 nucleotides H281DRAFT_05609: H281DRAFT_05609 - penicillin-binding protein 1A, at 28,268 to 30,661 _05609 H281DRAFT_05610: H281DRAFT_05610 - hypothetical protein, at 30,916 to 31,908 _05610 H281DRAFT_05611: H281DRAFT_05611 - type IV pilus assembly protein PilN, at 31,905 to 32,657 _05611 H281DRAFT_05612: H281DRAFT_05612 - hypothetical protein, at 32,654 to 33,601 _05612 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1at 30.112 kb on - strand, within H281DRAFT_05609at 30.662 kb on - strandat 30.663 kb on + strandat 30.663 kb on + strandat 30.664 kb on - strandat 30.664 kb on - strandat 30.664 kb on - strandat 30.664 kb on - strandat 30.664 kb on - strandat 30.691 kb on + strandat 30.737 kb on + strandat 30.737 kb on + strandat 30.737 kb on + strandat 30.737 kb on + strandat 30.738 kb on - strandat 30.738 kb on - strandat 30.774 kb on + strandat 30.774 kb on + strandat 30.774 kb on + strandat 30.775 kb on - strandat 31.084 kb on - strand, within H281DRAFT_05610at 31.558 kb on + strand, within H281DRAFT_05610at 31.558 kb on + strand, within H281DRAFT_05610at 31.559 kb on - strand, within H281DRAFT_05610at 31.824 kb on - strandat 32.026 kb on + strand, within H281DRAFT_05611at 32.298 kb on + strand, within H281DRAFT_05611at 32.350 kb on + strand, within H281DRAFT_05611at 32.350 kb on + strand, within H281DRAFT_05611at 32.350 kb on + strand, within H281DRAFT_05611at 32.350 kb on + strand, within H281DRAFT_05611at 32.351 kb on - strand, within H281DRAFT_05611at 32.351 kb on - strand, within H281DRAFT_05611at 32.351 kb on - strand, within H281DRAFT_05611at 32.412 kb on - strand, within H281DRAFT_05611at 32.432 kb on + strand, within H281DRAFT_05611at 32.433 kb on - strand, within H281DRAFT_05611at 32.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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30,112 - H281DRAFT_05609 0.77 +0.3
30,662 - -0.5
30,663 + +0.9
30,663 + -0.4
30,664 - +0.3
30,664 - -0.9
30,664 - -0.1
30,664 - +0.1
30,664 - +0.1
30,691 + -0.2
30,737 + +0.6
30,737 + +0.1
30,737 + +1.1
30,737 + +0.5
30,738 - +0.9
30,738 - +0.4
30,774 + -0.6
30,774 + +0.7
30,774 + -0.2
30,775 - +0.3
31,084 - H281DRAFT_05610 0.17 -1.6
31,558 + H281DRAFT_05610 0.65 +1.3
31,558 + H281DRAFT_05610 0.65 +0.6
31,559 - H281DRAFT_05610 0.65 +0.3
31,824 - +0.7
32,026 + H281DRAFT_05611 0.16 -0.3
32,298 + H281DRAFT_05611 0.52 +0.5
32,350 + H281DRAFT_05611 0.59 -0.4
32,350 + H281DRAFT_05611 0.59 +0.1
32,350 + H281DRAFT_05611 0.59 -0.2
32,350 + H281DRAFT_05611 0.59 +0.1
32,351 - H281DRAFT_05611 0.59 +0.1
32,351 - H281DRAFT_05611 0.59 +0.3
32,351 - H281DRAFT_05611 0.59 -0.5
32,412 - H281DRAFT_05611 0.67 +0.6
32,432 + H281DRAFT_05611 0.70 -0.1
32,433 - H281DRAFT_05611 0.70 -0.6
32,624 - +0.1

Or see this region's nucleotide sequence