Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05609 and H281DRAFT_05610 are separated by 254 nucleotides H281DRAFT_05610 and H281DRAFT_05611 overlap by 4 nucleotides H281DRAFT_05611 and H281DRAFT_05612 overlap by 4 nucleotides
H281DRAFT_05609: H281DRAFT_05609 - penicillin-binding protein 1A, at 28,268 to 30,661
_05609
H281DRAFT_05610: H281DRAFT_05610 - hypothetical protein, at 30,916 to 31,908
_05610
H281DRAFT_05611: H281DRAFT_05611 - type IV pilus assembly protein PilN, at 31,905 to 32,657
_05611
H281DRAFT_05612: H281DRAFT_05612 - hypothetical protein, at 32,654 to 33,601
_05612
Position (kb)
30
31
32 Strain fitness (log2 ratio)
-1
0
1 at 30.112 kb on - strand, within H281DRAFT_05609 at 30.662 kb on - strand at 30.663 kb on + strand at 30.663 kb on + strand at 30.664 kb on - strand at 30.664 kb on - strand at 30.664 kb on - strand at 30.664 kb on - strand at 30.664 kb on - strand at 30.691 kb on + strand at 30.737 kb on + strand at 30.737 kb on + strand at 30.737 kb on + strand at 30.737 kb on + strand at 30.738 kb on - strand at 30.738 kb on - strand at 30.774 kb on + strand at 30.774 kb on + strand at 30.774 kb on + strand at 30.775 kb on - strand at 31.084 kb on - strand, within H281DRAFT_05610 at 31.558 kb on + strand, within H281DRAFT_05610 at 31.558 kb on + strand, within H281DRAFT_05610 at 31.559 kb on - strand, within H281DRAFT_05610 at 31.824 kb on - strand at 32.026 kb on + strand, within H281DRAFT_05611 at 32.298 kb on + strand, within H281DRAFT_05611 at 32.350 kb on + strand, within H281DRAFT_05611 at 32.350 kb on + strand, within H281DRAFT_05611 at 32.350 kb on + strand, within H281DRAFT_05611 at 32.350 kb on + strand, within H281DRAFT_05611 at 32.351 kb on - strand, within H281DRAFT_05611 at 32.351 kb on - strand, within H281DRAFT_05611 at 32.351 kb on - strand, within H281DRAFT_05611 at 32.412 kb on - strand, within H281DRAFT_05611 at 32.432 kb on + strand, within H281DRAFT_05611 at 32.433 kb on - strand, within H281DRAFT_05611 at 32.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 30,112 - H281DRAFT_05609 0.77 +0.3 30,662 - -0.5 30,663 + +0.9 30,663 + -0.4 30,664 - +0.3 30,664 - -0.9 30,664 - -0.1 30,664 - +0.1 30,664 - +0.1 30,691 + -0.2 30,737 + +0.6 30,737 + +0.1 30,737 + +1.1 30,737 + +0.5 30,738 - +0.9 30,738 - +0.4 30,774 + -0.6 30,774 + +0.7 30,774 + -0.2 30,775 - +0.3 31,084 - H281DRAFT_05610 0.17 -1.6 31,558 + H281DRAFT_05610 0.65 +1.3 31,558 + H281DRAFT_05610 0.65 +0.6 31,559 - H281DRAFT_05610 0.65 +0.3 31,824 - +0.7 32,026 + H281DRAFT_05611 0.16 -0.3 32,298 + H281DRAFT_05611 0.52 +0.5 32,350 + H281DRAFT_05611 0.59 -0.4 32,350 + H281DRAFT_05611 0.59 +0.1 32,350 + H281DRAFT_05611 0.59 -0.2 32,350 + H281DRAFT_05611 0.59 +0.1 32,351 - H281DRAFT_05611 0.59 +0.1 32,351 - H281DRAFT_05611 0.59 +0.3 32,351 - H281DRAFT_05611 0.59 -0.5 32,412 - H281DRAFT_05611 0.67 +0.6 32,432 + H281DRAFT_05611 0.70 -0.1 32,433 - H281DRAFT_05611 0.70 -0.6 32,624 - +0.1
Or see this region's nucleotide sequence