Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05560 and H281DRAFT_05561 are separated by 240 nucleotides H281DRAFT_05561 and H281DRAFT_05562 are separated by 32 nucleotides
H281DRAFT_05560: H281DRAFT_05560 - putative acyl-CoA dehydrogenase, at 151,559 to 153,277
_05560
H281DRAFT_05561: H281DRAFT_05561 - transcriptional regulator, TetR family, at 153,518 to 154,189
_05561
H281DRAFT_05562: H281DRAFT_05562 - indolepyruvate ferredoxin oxidoreductase, at 154,222 to 157,713
_05562
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 152.539 kb on + strand, within H281DRAFT_05560 at 152.539 kb on + strand, within H281DRAFT_05560 at 152.540 kb on - strand, within H281DRAFT_05560 at 152.540 kb on - strand, within H281DRAFT_05560 at 152.595 kb on + strand, within H281DRAFT_05560 at 152.638 kb on - strand, within H281DRAFT_05560 at 152.664 kb on - strand, within H281DRAFT_05560 at 152.726 kb on + strand, within H281DRAFT_05560 at 152.726 kb on + strand, within H281DRAFT_05560 at 152.727 kb on - strand, within H281DRAFT_05560 at 152.727 kb on - strand, within H281DRAFT_05560 at 152.871 kb on + strand, within H281DRAFT_05560 at 152.934 kb on - strand, within H281DRAFT_05560 at 153.223 kb on - strand at 153.278 kb on + strand at 153.278 kb on + strand at 153.279 kb on - strand at 153.279 kb on - strand at 153.300 kb on - strand at 153.484 kb on - strand at 153.705 kb on - strand, within H281DRAFT_05561 at 153.880 kb on + strand, within H281DRAFT_05561 at 153.880 kb on + strand, within H281DRAFT_05561 at 153.903 kb on - strand, within H281DRAFT_05561 at 153.997 kb on + strand, within H281DRAFT_05561 at 153.997 kb on + strand, within H281DRAFT_05561 at 153.997 kb on + strand, within H281DRAFT_05561 at 153.998 kb on - strand, within H281DRAFT_05561 at 153.998 kb on - strand, within H281DRAFT_05561 at 153.998 kb on - strand, within H281DRAFT_05561 at 154.223 kb on + strand at 154.223 kb on + strand at 154.225 kb on + strand at 154.225 kb on + strand at 154.225 kb on + strand at 154.225 kb on + strand at 154.226 kb on - strand at 154.226 kb on - strand at 154.418 kb on + strand at 154.418 kb on + strand at 154.419 kb on - strand at 154.419 kb on - strand at 154.512 kb on + strand at 154.513 kb on - strand at 154.513 kb on - strand at 154.595 kb on + strand, within H281DRAFT_05562 at 154.595 kb on + strand, within H281DRAFT_05562 at 154.596 kb on - strand, within H281DRAFT_05562 at 154.596 kb on - strand, within H281DRAFT_05562 at 154.596 kb on - strand, within H281DRAFT_05562 at 154.599 kb on + strand, within H281DRAFT_05562 at 154.599 kb on + strand, within H281DRAFT_05562 at 154.600 kb on - strand, within H281DRAFT_05562 at 154.600 kb on - strand, within H281DRAFT_05562 at 154.662 kb on + strand, within H281DRAFT_05562 at 154.663 kb on - strand, within H281DRAFT_05562 at 154.677 kb on - strand, within H281DRAFT_05562 at 154.688 kb on + strand, within H281DRAFT_05562 at 154.688 kb on + strand, within H281DRAFT_05562 at 154.688 kb on + strand, within H281DRAFT_05562 at 154.729 kb on + strand, within H281DRAFT_05562 at 154.730 kb on - strand, within H281DRAFT_05562 at 154.730 kb on - strand, within H281DRAFT_05562 at 154.787 kb on + strand, within H281DRAFT_05562 at 154.787 kb on + strand, within H281DRAFT_05562 at 154.788 kb on - strand, within H281DRAFT_05562 at 154.843 kb on + strand, within H281DRAFT_05562 at 155.069 kb on - strand, within H281DRAFT_05562
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 152,539 + H281DRAFT_05560 0.57 -0.3 152,539 + H281DRAFT_05560 0.57 -1.0 152,540 - H281DRAFT_05560 0.57 -0.5 152,540 - H281DRAFT_05560 0.57 -0.2 152,595 + H281DRAFT_05560 0.60 -0.3 152,638 - H281DRAFT_05560 0.63 -0.2 152,664 - H281DRAFT_05560 0.64 +0.3 152,726 + H281DRAFT_05560 0.68 +0.1 152,726 + H281DRAFT_05560 0.68 +0.5 152,727 - H281DRAFT_05560 0.68 +1.6 152,727 - H281DRAFT_05560 0.68 +0.5 152,871 + H281DRAFT_05560 0.76 +0.7 152,934 - H281DRAFT_05560 0.80 +0.3 153,223 - +0.3 153,278 + +0.2 153,278 + +1.0 153,279 - -1.4 153,279 - +0.2 153,300 - +0.0 153,484 - +0.8 153,705 - H281DRAFT_05561 0.28 +0.4 153,880 + H281DRAFT_05561 0.54 +0.9 153,880 + H281DRAFT_05561 0.54 +1.0 153,903 - H281DRAFT_05561 0.57 +1.5 153,997 + H281DRAFT_05561 0.71 +0.9 153,997 + H281DRAFT_05561 0.71 +2.0 153,997 + H281DRAFT_05561 0.71 +0.5 153,998 - H281DRAFT_05561 0.71 +1.0 153,998 - H281DRAFT_05561 0.71 +0.9 153,998 - H281DRAFT_05561 0.71 +1.3 154,223 + +0.3 154,223 + +0.3 154,225 + +0.2 154,225 + -1.9 154,225 + +0.3 154,225 + +0.8 154,226 - -0.5 154,226 - -0.7 154,418 + +2.9 154,418 + +0.1 154,419 - -1.3 154,419 - +1.0 154,512 + -0.1 154,513 - +0.8 154,513 - -0.3 154,595 + H281DRAFT_05562 0.11 -0.5 154,595 + H281DRAFT_05562 0.11 +0.0 154,596 - H281DRAFT_05562 0.11 -0.5 154,596 - H281DRAFT_05562 0.11 +0.1 154,596 - H281DRAFT_05562 0.11 +0.0 154,599 + H281DRAFT_05562 0.11 +0.5 154,599 + H281DRAFT_05562 0.11 +0.2 154,600 - H281DRAFT_05562 0.11 +0.1 154,600 - H281DRAFT_05562 0.11 -0.3 154,662 + H281DRAFT_05562 0.13 +0.2 154,663 - H281DRAFT_05562 0.13 -0.1 154,677 - H281DRAFT_05562 0.13 -0.2 154,688 + H281DRAFT_05562 0.13 -0.4 154,688 + H281DRAFT_05562 0.13 +1.7 154,688 + H281DRAFT_05562 0.13 -1.3 154,729 + H281DRAFT_05562 0.15 +2.1 154,730 - H281DRAFT_05562 0.15 +1.1 154,730 - H281DRAFT_05562 0.15 +0.2 154,787 + H281DRAFT_05562 0.16 +0.3 154,787 + H281DRAFT_05562 0.16 -0.5 154,788 - H281DRAFT_05562 0.16 -1.8 154,843 + H281DRAFT_05562 0.18 -0.7 155,069 - H281DRAFT_05562 0.24 +0.1
Or see this region's nucleotide sequence