Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05468

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05467 and H281DRAFT_05468 are separated by 190 nucleotidesH281DRAFT_05468 and H281DRAFT_05469 are separated by 83 nucleotides H281DRAFT_05467: H281DRAFT_05467 - hypothetical protein, at 48,115 to 48,465 _05467 H281DRAFT_05468: H281DRAFT_05468 - Transposase Tn5 dimerisation domain-containing protein, at 48,656 to 49,006 _05468 H281DRAFT_05469: H281DRAFT_05469 - transcriptional regulator, IclR family, at 49,090 to 49,830 _05469 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 47.675 kb on + strandat 47.719 kb on + strandat 47.731 kb on + strandat 47.731 kb on + strandat 47.731 kb on + strandat 47.731 kb on + strandat 47.731 kb on + strandat 47.731 kb on + strandat 47.732 kb on - strandat 47.732 kb on - strandat 47.732 kb on - strandat 47.732 kb on - strandat 48.052 kb on + strandat 48.052 kb on + strandat 48.053 kb on - strandat 48.159 kb on + strand, within H281DRAFT_05467at 48.160 kb on - strand, within H281DRAFT_05467at 48.242 kb on - strand, within H281DRAFT_05467at 48.260 kb on + strand, within H281DRAFT_05467at 48.261 kb on - strand, within H281DRAFT_05467at 48.665 kb on - strandat 48.945 kb on + strand, within H281DRAFT_05468at 48.946 kb on - strand, within H281DRAFT_05468at 48.973 kb on + strandat 49.028 kb on + strandat 49.028 kb on + strandat 49.029 kb on - strandat 49.086 kb on + strandat 49.086 kb on + strandat 49.127 kb on + strandat 49.208 kb on - strand, within H281DRAFT_05469at 49.208 kb on - strand, within H281DRAFT_05469at 49.235 kb on + strandat 49.295 kb on - strand, within H281DRAFT_05469at 49.719 kb on - strand, within H281DRAFT_05469at 49.734 kb on - strand, within H281DRAFT_05469at 49.812 kb on - strandat 49.986 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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47,675 + +0.0
47,719 + +1.1
47,731 + +0.4
47,731 + +0.7
47,731 + +0.1
47,731 + +0.5
47,731 + -0.7
47,731 + +0.5
47,732 - -0.0
47,732 - -0.1
47,732 - +2.1
47,732 - +0.0
48,052 + +1.2
48,052 + +0.3
48,053 - +0.5
48,159 + H281DRAFT_05467 0.13 +0.6
48,160 - H281DRAFT_05467 0.13 +0.5
48,242 - H281DRAFT_05467 0.36 +0.5
48,260 + H281DRAFT_05467 0.41 -0.3
48,261 - H281DRAFT_05467 0.42 -0.4
48,665 - -0.2
48,945 + H281DRAFT_05468 0.82 +0.7
48,946 - H281DRAFT_05468 0.83 +0.9
48,973 + -0.1
49,028 + +0.3
49,028 + +0.5
49,029 - -0.9
49,086 + +0.2
49,086 + -2.6
49,127 + +0.7
49,208 - H281DRAFT_05469 0.16 -0.5
49,208 - H281DRAFT_05469 0.16 -1.2
49,235 + -0.3
49,295 - H281DRAFT_05469 0.28 -0.3
49,719 - H281DRAFT_05469 0.85 -1.2
49,734 - H281DRAFT_05469 0.87 -1.2
49,812 - -0.2
49,986 - +0.2

Or see this region's nucleotide sequence