Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03630 and H281DRAFT_03631 are separated by 144 nucleotides H281DRAFT_03631 and H281DRAFT_03632 are separated by 139 nucleotides H281DRAFT_03632 and H281DRAFT_03633 are separated by 14 nucleotides
H281DRAFT_03630: H281DRAFT_03630 - acid phosphatase, at 139,375 to 141,084
_03630
H281DRAFT_03631: H281DRAFT_03631 - hypothetical protein, at 141,229 to 141,525
_03631
H281DRAFT_03632: H281DRAFT_03632 - transcriptional regulator, IclR family, at 141,665 to 142,675
_03632
H281DRAFT_03633: H281DRAFT_03633 - Outer membrane protein (porin), at 142,690 to 143,763
_03633
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.753 kb on + strand, within H281DRAFT_03630 at 140.753 kb on + strand, within H281DRAFT_03630 at 140.773 kb on - strand, within H281DRAFT_03630 at 140.808 kb on - strand, within H281DRAFT_03630 at 140.808 kb on - strand, within H281DRAFT_03630 at 140.837 kb on + strand, within H281DRAFT_03630 at 141.045 kb on + strand at 141.158 kb on + strand at 141.158 kb on + strand at 141.230 kb on + strand at 141.231 kb on - strand at 141.259 kb on - strand, within H281DRAFT_03631 at 141.259 kb on - strand, within H281DRAFT_03631 at 141.461 kb on - strand, within H281DRAFT_03631 at 141.461 kb on - strand, within H281DRAFT_03631 at 141.461 kb on - strand, within H281DRAFT_03631 at 141.483 kb on - strand, within H281DRAFT_03631 at 141.601 kb on + strand at 141.618 kb on + strand at 141.619 kb on - strand at 141.619 kb on - strand at 141.619 kb on - strand at 141.857 kb on + strand, within H281DRAFT_03632 at 141.858 kb on - strand, within H281DRAFT_03632 at 141.858 kb on - strand, within H281DRAFT_03632 at 141.921 kb on + strand, within H281DRAFT_03632 at 141.967 kb on + strand, within H281DRAFT_03632 at 141.968 kb on - strand, within H281DRAFT_03632 at 141.968 kb on - strand, within H281DRAFT_03632 at 142.035 kb on - strand, within H281DRAFT_03632 at 142.060 kb on - strand, within H281DRAFT_03632 at 142.300 kb on + strand, within H281DRAFT_03632 at 142.325 kb on + strand, within H281DRAFT_03632 at 142.385 kb on + strand, within H281DRAFT_03632 at 142.386 kb on - strand, within H281DRAFT_03632 at 142.793 kb on + strand at 142.794 kb on - strand at 142.808 kb on + strand, within H281DRAFT_03633 at 142.835 kb on + strand, within H281DRAFT_03633 at 142.835 kb on + strand, within H281DRAFT_03633 at 142.835 kb on + strand, within H281DRAFT_03633 at 142.946 kb on + strand, within H281DRAFT_03633 at 142.946 kb on + strand, within H281DRAFT_03633 at 142.997 kb on + strand, within H281DRAFT_03633 at 142.997 kb on + strand, within H281DRAFT_03633 at 142.997 kb on + strand, within H281DRAFT_03633 at 142.998 kb on - strand, within H281DRAFT_03633 at 142.998 kb on - strand, within H281DRAFT_03633 at 143.030 kb on + strand at 143.031 kb on - strand, within H281DRAFT_03633 at 143.031 kb on - strand, within H281DRAFT_03633 at 143.073 kb on - strand, within H281DRAFT_03633 at 143.073 kb on - strand, within H281DRAFT_03633 at 143.073 kb on - strand, within H281DRAFT_03633 at 143.183 kb on + strand, within H281DRAFT_03633 at 143.187 kb on + strand, within H281DRAFT_03633 at 143.188 kb on - strand, within H281DRAFT_03633 at 143.376 kb on - strand, within H281DRAFT_03633 at 143.523 kb on - strand, within H281DRAFT_03633 at 143.575 kb on + strand, within H281DRAFT_03633 at 143.576 kb on - strand, within H281DRAFT_03633 at 143.657 kb on + strand at 143.657 kb on + strand at 143.657 kb on + strand at 143.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 140,753 + H281DRAFT_03630 0.81 -2.3 140,753 + H281DRAFT_03630 0.81 +0.7 140,773 - H281DRAFT_03630 0.82 +0.6 140,808 - H281DRAFT_03630 0.84 +0.8 140,808 - H281DRAFT_03630 0.84 +0.2 140,837 + H281DRAFT_03630 0.85 +0.1 141,045 + +0.5 141,158 + +0.4 141,158 + -0.5 141,230 + -0.4 141,231 - -0.6 141,259 - H281DRAFT_03631 0.10 +0.4 141,259 - H281DRAFT_03631 0.10 -1.5 141,461 - H281DRAFT_03631 0.78 -0.1 141,461 - H281DRAFT_03631 0.78 +0.2 141,461 - H281DRAFT_03631 0.78 +0.6 141,483 - H281DRAFT_03631 0.86 +0.1 141,601 + +0.2 141,618 + +0.4 141,619 - -2.5 141,619 - +2.7 141,619 - +0.1 141,857 + H281DRAFT_03632 0.19 -0.5 141,858 - H281DRAFT_03632 0.19 -1.3 141,858 - H281DRAFT_03632 0.19 -0.2 141,921 + H281DRAFT_03632 0.25 -0.2 141,967 + H281DRAFT_03632 0.30 +0.7 141,968 - H281DRAFT_03632 0.30 +0.7 141,968 - H281DRAFT_03632 0.30 +0.8 142,035 - H281DRAFT_03632 0.37 +0.1 142,060 - H281DRAFT_03632 0.39 +0.0 142,300 + H281DRAFT_03632 0.63 +0.4 142,325 + H281DRAFT_03632 0.65 -1.8 142,385 + H281DRAFT_03632 0.71 -0.3 142,386 - H281DRAFT_03632 0.71 +0.2 142,793 + +0.7 142,794 - -0.1 142,808 + H281DRAFT_03633 0.11 +0.2 142,835 + H281DRAFT_03633 0.14 +0.0 142,835 + H281DRAFT_03633 0.14 +0.3 142,835 + H281DRAFT_03633 0.14 -0.3 142,946 + H281DRAFT_03633 0.24 -0.7 142,946 + H281DRAFT_03633 0.24 +0.3 142,997 + H281DRAFT_03633 0.29 +1.4 142,997 + H281DRAFT_03633 0.29 +0.2 142,997 + H281DRAFT_03633 0.29 +0.2 142,998 - H281DRAFT_03633 0.29 +0.1 142,998 - H281DRAFT_03633 0.29 +0.5 143,030 + +2.0 143,031 - H281DRAFT_03633 0.32 +0.4 143,031 - H281DRAFT_03633 0.32 +0.3 143,073 - H281DRAFT_03633 0.36 +0.1 143,073 - H281DRAFT_03633 0.36 +0.6 143,073 - H281DRAFT_03633 0.36 +0.1 143,183 + H281DRAFT_03633 0.46 -1.5 143,187 + H281DRAFT_03633 0.46 -0.6 143,188 - H281DRAFT_03633 0.46 +0.4 143,376 - H281DRAFT_03633 0.64 -0.1 143,523 - H281DRAFT_03633 0.78 -0.1 143,575 + H281DRAFT_03633 0.82 +0.1 143,576 - H281DRAFT_03633 0.82 +0.9 143,657 + -1.2 143,657 + -0.4 143,657 + -0.3 143,658 - -0.3
Or see this region's nucleotide sequence