Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02451

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02450 and H281DRAFT_02451 overlap by 8 nucleotidesH281DRAFT_02451 and H281DRAFT_02452 are separated by 7 nucleotides H281DRAFT_02450: H281DRAFT_02450 - glycine betaine/proline transport system ATP-binding protein, at 14,739 to 15,920 _02450 H281DRAFT_02451: H281DRAFT_02451 - glycine betaine/proline transport system permease protein, at 15,913 to 16,815 _02451 H281DRAFT_02452: H281DRAFT_02452 - transcriptional regulator, AraC family with amidase-like domain, at 16,823 to 17,821 _02452 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1at 15.753 kb on + strand, within H281DRAFT_02450at 15.753 kb on + strand, within H281DRAFT_02450at 16.089 kb on - strand, within H281DRAFT_02451at 16.325 kb on - strand, within H281DRAFT_02451at 16.341 kb on + strand, within H281DRAFT_02451at 16.342 kb on - strand, within H281DRAFT_02451at 16.964 kb on + strand, within H281DRAFT_02452at 16.985 kb on + strand, within H281DRAFT_02452at 17.038 kb on + strand, within H281DRAFT_02452at 17.041 kb on + strand, within H281DRAFT_02452at 17.123 kb on + strand, within H281DRAFT_02452at 17.263 kb on + strand, within H281DRAFT_02452at 17.264 kb on - strand, within H281DRAFT_02452at 17.286 kb on - strand, within H281DRAFT_02452at 17.465 kb on + strand, within H281DRAFT_02452at 17.638 kb on - strand, within H281DRAFT_02452at 17.652 kb on - strand, within H281DRAFT_02452at 17.652 kb on - strand, within H281DRAFT_02452at 17.654 kb on + strand, within H281DRAFT_02452

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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15,753 + H281DRAFT_02450 0.86 +0.4
15,753 + H281DRAFT_02450 0.86 -0.3
16,089 - H281DRAFT_02451 0.19 -0.6
16,325 - H281DRAFT_02451 0.46 +0.3
16,341 + H281DRAFT_02451 0.47 -0.7
16,342 - H281DRAFT_02451 0.48 -2.5
16,964 + H281DRAFT_02452 0.14 -0.1
16,985 + H281DRAFT_02452 0.16 +0.5
17,038 + H281DRAFT_02452 0.22 +0.2
17,041 + H281DRAFT_02452 0.22 +0.6
17,123 + H281DRAFT_02452 0.30 +0.2
17,263 + H281DRAFT_02452 0.44 +0.9
17,264 - H281DRAFT_02452 0.44 -0.4
17,286 - H281DRAFT_02452 0.46 -0.2
17,465 + H281DRAFT_02452 0.64 -1.5
17,638 - H281DRAFT_02452 0.82 -0.3
17,652 - H281DRAFT_02452 0.83 -0.5
17,652 - H281DRAFT_02452 0.83 -0.1
17,654 + H281DRAFT_02452 0.83 -0.2

Or see this region's nucleotide sequence