Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01928

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01927 and H281DRAFT_01928 are separated by 171 nucleotidesH281DRAFT_01928 and H281DRAFT_01929 are separated by 326 nucleotidesH281DRAFT_01929 and H281DRAFT_01930 are separated by 139 nucleotides H281DRAFT_01927: H281DRAFT_01927 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 44,133 to 45,647 _01927 H281DRAFT_01928: H281DRAFT_01928 - sigma 54 modulation protein /SSU ribosomal protein S30P, at 45,819 to 46,175 _01928 H281DRAFT_01929: H281DRAFT_01929 - PTS IIA-like nitrogen-regulatory protein PtsN, at 46,502 to 47,017 _01929 H281DRAFT_01930: H281DRAFT_01930 - Hpr(Ser) kinase/phosphatase, at 47,157 to 48,125 _01930 Position (kb) 45 46 47Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 44.827 kb on + strand, within H281DRAFT_01927at 44.827 kb on + strand, within H281DRAFT_01927at 44.827 kb on + strand, within H281DRAFT_01927at 44.828 kb on - strand, within H281DRAFT_01927at 44.883 kb on + strand, within H281DRAFT_01927at 44.883 kb on + strand, within H281DRAFT_01927at 45.007 kb on - strand, within H281DRAFT_01927at 45.027 kb on + strand, within H281DRAFT_01927at 45.028 kb on - strand, within H281DRAFT_01927at 45.123 kb on + strand, within H281DRAFT_01927at 45.124 kb on - strand, within H281DRAFT_01927at 45.124 kb on - strand, within H281DRAFT_01927at 45.131 kb on + strand, within H281DRAFT_01927at 45.131 kb on + strand, within H281DRAFT_01927at 45.132 kb on - strand, within H281DRAFT_01927at 45.132 kb on - strand, within H281DRAFT_01927at 45.213 kb on - strand, within H281DRAFT_01927at 45.213 kb on - strand, within H281DRAFT_01927at 45.213 kb on - strand, within H281DRAFT_01927at 45.299 kb on + strand, within H281DRAFT_01927at 45.299 kb on + strand, within H281DRAFT_01927at 45.300 kb on - strand, within H281DRAFT_01927at 45.332 kb on + strand, within H281DRAFT_01927at 45.332 kb on + strand, within H281DRAFT_01927at 45.333 kb on - strand, within H281DRAFT_01927at 45.333 kb on - strand, within H281DRAFT_01927at 45.381 kb on + strand, within H281DRAFT_01927at 45.381 kb on + strand, within H281DRAFT_01927at 45.381 kb on + strand, within H281DRAFT_01927at 45.381 kb on + strand, within H281DRAFT_01927at 45.382 kb on - strand, within H281DRAFT_01927at 45.382 kb on - strand, within H281DRAFT_01927at 45.382 kb on - strand, within H281DRAFT_01927at 45.417 kb on + strand, within H281DRAFT_01927at 45.418 kb on - strand, within H281DRAFT_01927at 45.418 kb on - strand, within H281DRAFT_01927at 45.499 kb on + strandat 45.499 kb on + strandat 45.500 kb on - strandat 45.774 kb on + strandat 45.774 kb on + strandat 45.774 kb on + strandat 45.775 kb on - strandat 45.775 kb on - strandat 45.775 kb on - strandat 45.775 kb on - strandat 45.775 kb on - strandat 45.802 kb on + strandat 45.818 kb on + strandat 45.818 kb on + strandat 45.818 kb on + strandat 45.819 kb on - strandat 45.853 kb on + strandat 45.854 kb on - strandat 45.893 kb on + strand, within H281DRAFT_01928at 45.901 kb on + strand, within H281DRAFT_01928at 45.902 kb on - strand, within H281DRAFT_01928at 46.044 kb on + strand, within H281DRAFT_01928at 46.044 kb on + strand, within H281DRAFT_01928at 46.045 kb on - strand, within H281DRAFT_01928at 46.090 kb on + strand, within H281DRAFT_01928at 46.090 kb on + strand, within H281DRAFT_01928at 46.090 kb on + strand, within H281DRAFT_01928at 46.090 kb on + strandat 46.091 kb on - strand, within H281DRAFT_01928at 46.138 kb on - strand, within H281DRAFT_01928at 46.138 kb on - strand, within H281DRAFT_01928at 46.183 kb on + strandat 46.183 kb on + strandat 46.184 kb on - strandat 46.193 kb on - strandat 46.354 kb on + strandat 46.354 kb on + strandat 46.355 kb on - strandat 46.355 kb on - strandat 46.382 kb on + strandat 46.400 kb on + strandat 46.400 kb on + strandat 46.400 kb on + strandat 46.400 kb on + strandat 46.400 kb on + strandat 46.401 kb on - strandat 46.401 kb on - strandat 46.401 kb on - strandat 46.401 kb on - strandat 46.401 kb on - strandat 46.402 kb on + strandat 46.402 kb on + strandat 46.402 kb on + strandat 46.402 kb on + strandat 46.427 kb on + strandat 46.455 kb on + strandat 46.455 kb on + strandat 46.455 kb on + strandat 47.077 kb on + strandat 47.077 kb on + strandat 47.077 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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44,827 + H281DRAFT_01927 0.46 -2.8
44,827 + H281DRAFT_01927 0.46 -3.4
44,827 + H281DRAFT_01927 0.46 -3.6
44,828 - H281DRAFT_01927 0.46 -4.4
44,883 + H281DRAFT_01927 0.50 -3.6
44,883 + H281DRAFT_01927 0.50 -2.5
45,007 - H281DRAFT_01927 0.58 -3.9
45,027 + H281DRAFT_01927 0.59 -2.6
45,028 - H281DRAFT_01927 0.59 -3.4
45,123 + H281DRAFT_01927 0.65 -5.4
45,124 - H281DRAFT_01927 0.65 -5.3
45,124 - H281DRAFT_01927 0.65 -3.5
45,131 + H281DRAFT_01927 0.66 -1.2
45,131 + H281DRAFT_01927 0.66 -2.3
45,132 - H281DRAFT_01927 0.66 -3.1
45,132 - H281DRAFT_01927 0.66 -5.1
45,213 - H281DRAFT_01927 0.71 -1.6
45,213 - H281DRAFT_01927 0.71 -5.6
45,213 - H281DRAFT_01927 0.71 -4.7
45,299 + H281DRAFT_01927 0.77 -4.1
45,299 + H281DRAFT_01927 0.77 -5.0
45,300 - H281DRAFT_01927 0.77 -2.7
45,332 + H281DRAFT_01927 0.79 -4.1
45,332 + H281DRAFT_01927 0.79 -4.9
45,333 - H281DRAFT_01927 0.79 -5.0
45,333 - H281DRAFT_01927 0.79 -1.3
45,381 + H281DRAFT_01927 0.82 -6.0
45,381 + H281DRAFT_01927 0.82 -4.7
45,381 + H281DRAFT_01927 0.82 -3.6
45,381 + H281DRAFT_01927 0.82 -2.3
45,382 - H281DRAFT_01927 0.82 -2.2
45,382 - H281DRAFT_01927 0.82 -3.0
45,382 - H281DRAFT_01927 0.82 -3.2
45,417 + H281DRAFT_01927 0.85 -4.5
45,418 - H281DRAFT_01927 0.85 -3.3
45,418 - H281DRAFT_01927 0.85 -1.5
45,499 + -2.4
45,499 + -5.3
45,500 - -4.8
45,774 + +0.4
45,774 + -0.6
45,774 + -0.8
45,775 - +0.2
45,775 - +0.1
45,775 - +0.6
45,775 - +0.0
45,775 - -0.4
45,802 + +0.1
45,818 + +0.3
45,818 + +0.4
45,818 + -0.0
45,819 - +0.3
45,853 + -0.2
45,854 - -0.4
45,893 + H281DRAFT_01928 0.21 +0.1
45,901 + H281DRAFT_01928 0.23 +0.1
45,902 - H281DRAFT_01928 0.23 -0.9
46,044 + H281DRAFT_01928 0.63 +0.4
46,044 + H281DRAFT_01928 0.63 -0.1
46,045 - H281DRAFT_01928 0.63 -0.3
46,090 + H281DRAFT_01928 0.76 -1.4
46,090 + H281DRAFT_01928 0.76 +0.2
46,090 + H281DRAFT_01928 0.76 +0.1
46,090 + +0.2
46,091 - H281DRAFT_01928 0.76 -0.0
46,138 - H281DRAFT_01928 0.89 +0.6
46,138 - H281DRAFT_01928 0.89 +0.2
46,183 + +0.5
46,183 + +0.2
46,184 - +0.2
46,193 - +0.5
46,354 + +0.7
46,354 + +0.3
46,355 - +2.2
46,355 - -0.1
46,382 + -0.7
46,400 + +0.4
46,400 + -0.1
46,400 + -0.4
46,400 + +0.2
46,400 + -0.3
46,401 - -0.9
46,401 - +0.0
46,401 - -0.1
46,401 - +0.6
46,401 - -0.4
46,402 + -0.2
46,402 + -3.5
46,402 + -0.1
46,402 + -0.1
46,427 + +0.0
46,455 + +0.6
46,455 + -0.4
46,455 + -0.6
47,077 + -0.9
47,077 + +1.5
47,077 + +0.1

Or see this region's nucleotide sequence