Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01913

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01912 and H281DRAFT_01913 are separated by 320 nucleotidesH281DRAFT_01913 and H281DRAFT_01914 are separated by 33 nucleotides H281DRAFT_01912: H281DRAFT_01912 - Predicted arabinose efflux permease, MFS family, at 25,471 to 26,736 _01912 H281DRAFT_01913: H281DRAFT_01913 - Excinuclease ABC subunit A, at 27,057 to 29,930 _01913 H281DRAFT_01914: H281DRAFT_01914 - Predicted PurR-regulated permease PerM, at 29,964 to 31,049 _01914 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.478 kb on - strand, within H281DRAFT_01912at 26.931 kb on + strandat 26.931 kb on + strandat 26.932 kb on - strandat 26.932 kb on - strandat 26.932 kb on - strandat 26.932 kb on - strandat 27.006 kb on - strandat 27.008 kb on - strandat 27.008 kb on - strandat 27.008 kb on - strandat 27.008 kb on - strandat 27.008 kb on - strandat 27.008 kb on - strandat 27.010 kb on + strandat 27.050 kb on + strandat 27.051 kb on - strandat 27.072 kb on - strandat 27.118 kb on + strandat 27.118 kb on + strandat 27.118 kb on + strandat 27.119 kb on - strandat 27.139 kb on + strandat 27.140 kb on - strandat 27.140 kb on - strandat 27.213 kb on + strandat 27.214 kb on - strandat 27.234 kb on + strandat 27.234 kb on + strandat 27.235 kb on - strandat 27.385 kb on + strand, within H281DRAFT_01913at 27.411 kb on + strand, within H281DRAFT_01913at 27.411 kb on + strand, within H281DRAFT_01913at 27.411 kb on + strand, within H281DRAFT_01913at 27.636 kb on + strand, within H281DRAFT_01913at 27.636 kb on + strand, within H281DRAFT_01913at 27.636 kb on + strand, within H281DRAFT_01913at 27.637 kb on - strand, within H281DRAFT_01913at 27.684 kb on - strand, within H281DRAFT_01913at 27.852 kb on + strand, within H281DRAFT_01913at 27.852 kb on + strand, within H281DRAFT_01913at 28.030 kb on - strand, within H281DRAFT_01913at 28.159 kb on - strand, within H281DRAFT_01913at 28.159 kb on - strand, within H281DRAFT_01913at 28.278 kb on + strand, within H281DRAFT_01913at 28.279 kb on - strand, within H281DRAFT_01913at 28.377 kb on + strand, within H281DRAFT_01913at 28.378 kb on - strand, within H281DRAFT_01913at 28.521 kb on + strand, within H281DRAFT_01913at 28.521 kb on + strand, within H281DRAFT_01913at 28.521 kb on + strand, within H281DRAFT_01913at 28.620 kb on + strand, within H281DRAFT_01913at 28.620 kb on + strand, within H281DRAFT_01913at 28.620 kb on + strand, within H281DRAFT_01913at 28.620 kb on + strand, within H281DRAFT_01913at 28.620 kb on + strand, within H281DRAFT_01913at 28.621 kb on - strand, within H281DRAFT_01913at 28.759 kb on - strand, within H281DRAFT_01913at 28.759 kb on - strand, within H281DRAFT_01913at 28.759 kb on - strand, within H281DRAFT_01913at 28.863 kb on + strand, within H281DRAFT_01913at 28.863 kb on + strand, within H281DRAFT_01913at 28.863 kb on + strand, within H281DRAFT_01913at 28.864 kb on - strand, within H281DRAFT_01913at 28.864 kb on - strand, within H281DRAFT_01913at 28.994 kb on + strand, within H281DRAFT_01913at 28.994 kb on + strand, within H281DRAFT_01913at 28.994 kb on + strand, within H281DRAFT_01913at 28.994 kb on + strand, within H281DRAFT_01913at 28.995 kb on - strand, within H281DRAFT_01913at 28.995 kb on - strand, within H281DRAFT_01913at 28.995 kb on - strand, within H281DRAFT_01913at 28.995 kb on - strand, within H281DRAFT_01913at 29.052 kb on + strand, within H281DRAFT_01913at 29.053 kb on - strand, within H281DRAFT_01913at 29.077 kb on - strand, within H281DRAFT_01913at 29.077 kb on - strand, within H281DRAFT_01913at 29.104 kb on - strand, within H281DRAFT_01913at 29.196 kb on + strand, within H281DRAFT_01913at 29.196 kb on + strand, within H281DRAFT_01913at 29.196 kb on + strand, within H281DRAFT_01913at 29.197 kb on - strand, within H281DRAFT_01913at 29.197 kb on - strand, within H281DRAFT_01913at 29.197 kb on - strand, within H281DRAFT_01913at 29.198 kb on + strand, within H281DRAFT_01913at 29.199 kb on - strand, within H281DRAFT_01913at 29.199 kb on - strand, within H281DRAFT_01913at 29.199 kb on - strand, within H281DRAFT_01913at 29.199 kb on - strand, within H281DRAFT_01913at 29.227 kb on + strand, within H281DRAFT_01913at 29.228 kb on - strand, within H281DRAFT_01913at 29.332 kb on + strand, within H281DRAFT_01913at 29.333 kb on - strand, within H281DRAFT_01913at 29.333 kb on - strand, within H281DRAFT_01913at 29.333 kb on - strand, within H281DRAFT_01913at 29.364 kb on + strand, within H281DRAFT_01913at 29.364 kb on + strand, within H281DRAFT_01913at 29.364 kb on + strand, within H281DRAFT_01913at 29.364 kb on + strand, within H281DRAFT_01913at 29.365 kb on - strand, within H281DRAFT_01913at 29.397 kb on + strand, within H281DRAFT_01913at 29.398 kb on - strand, within H281DRAFT_01913at 29.398 kb on - strand, within H281DRAFT_01913at 29.424 kb on + strand, within H281DRAFT_01913at 29.425 kb on - strand, within H281DRAFT_01913at 29.425 kb on - strand, within H281DRAFT_01913at 29.425 kb on - strand, within H281DRAFT_01913at 29.475 kb on + strand, within H281DRAFT_01913at 29.545 kb on - strand, within H281DRAFT_01913at 29.606 kb on - strand, within H281DRAFT_01913at 29.606 kb on - strand, within H281DRAFT_01913at 29.644 kb on + strandat 29.645 kb on - strandat 29.645 kb on - strandat 29.645 kb on - strandat 29.646 kb on + strandat 29.646 kb on + strandat 29.646 kb on + strandat 29.647 kb on - strandat 29.647 kb on - strandat 29.708 kb on + strandat 29.708 kb on + strandat 29.709 kb on - strandat 29.733 kb on - strandat 29.736 kb on - strandat 29.736 kb on - strandat 29.768 kb on - strandat 29.771 kb on + strandat 29.771 kb on + strandat 29.771 kb on + strandat 29.772 kb on - strandat 29.885 kb on + strandat 29.889 kb on + strandat 29.889 kb on + strandat 29.889 kb on + strandat 29.889 kb on + strandat 29.922 kb on - strandat 29.928 kb on + strandat 30.010 kb on + strandat 30.011 kb on - strandat 30.011 kb on - strandat 30.081 kb on + strand, within H281DRAFT_01914at 30.081 kb on + strand, within H281DRAFT_01914at 30.173 kb on + strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.201 kb on - strand, within H281DRAFT_01914at 30.201 kb on - strand, within H281DRAFT_01914at 30.631 kb on + strand, within H281DRAFT_01914at 30.883 kb on - strand, within H281DRAFT_01914

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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26,478 - H281DRAFT_01912 0.80 -1.7
26,931 + -1.6
26,931 + -2.8
26,932 - -1.1
26,932 - -0.1
26,932 - +0.4
26,932 - -0.5
27,006 - +0.4
27,008 - +0.7
27,008 - -0.4
27,008 - -0.1
27,008 - +1.3
27,008 - -0.1
27,008 - -0.3
27,010 + +0.7
27,050 + +0.2
27,051 - +0.4
27,072 - -0.3
27,118 + +0.5
27,118 + -0.2
27,118 + +0.2
27,119 - -0.2
27,139 + +0.4
27,140 - -1.0
27,140 - +1.9
27,213 + -0.2
27,214 - +1.6
27,234 + +0.3
27,234 + -1.6
27,235 - -0.1
27,385 + H281DRAFT_01913 0.11 +0.4
27,411 + H281DRAFT_01913 0.12 -0.1
27,411 + H281DRAFT_01913 0.12 +0.0
27,411 + H281DRAFT_01913 0.12 +1.0
27,636 + H281DRAFT_01913 0.20 +0.0
27,636 + H281DRAFT_01913 0.20 +0.6
27,636 + H281DRAFT_01913 0.20 +0.2
27,637 - H281DRAFT_01913 0.20 -1.0
27,684 - H281DRAFT_01913 0.22 -0.2
27,852 + H281DRAFT_01913 0.28 -0.4
27,852 + H281DRAFT_01913 0.28 -0.1
28,030 - H281DRAFT_01913 0.34 +0.4
28,159 - H281DRAFT_01913 0.38 -0.0
28,159 - H281DRAFT_01913 0.38 -0.2
28,278 + H281DRAFT_01913 0.42 +0.8
28,279 - H281DRAFT_01913 0.43 +0.5
28,377 + H281DRAFT_01913 0.46 -0.2
28,378 - H281DRAFT_01913 0.46 -0.3
28,521 + H281DRAFT_01913 0.51 -0.8
28,521 + H281DRAFT_01913 0.51 -0.8
28,521 + H281DRAFT_01913 0.51 +0.4
28,620 + H281DRAFT_01913 0.54 -0.1
28,620 + H281DRAFT_01913 0.54 +0.4
28,620 + H281DRAFT_01913 0.54 -0.2
28,620 + H281DRAFT_01913 0.54 +0.3
28,620 + H281DRAFT_01913 0.54 +0.3
28,621 - H281DRAFT_01913 0.54 +0.4
28,759 - H281DRAFT_01913 0.59 +2.3
28,759 - H281DRAFT_01913 0.59 +0.0
28,759 - H281DRAFT_01913 0.59 -0.1
28,863 + H281DRAFT_01913 0.63 +2.1
28,863 + H281DRAFT_01913 0.63 +0.5
28,863 + H281DRAFT_01913 0.63 +0.1
28,864 - H281DRAFT_01913 0.63 -0.1
28,864 - H281DRAFT_01913 0.63 +0.2
28,994 + H281DRAFT_01913 0.67 -1.1
28,994 + H281DRAFT_01913 0.67 +0.3
28,994 + H281DRAFT_01913 0.67 -0.1
28,994 + H281DRAFT_01913 0.67 +0.2
28,995 - H281DRAFT_01913 0.67 +0.3
28,995 - H281DRAFT_01913 0.67 +0.1
28,995 - H281DRAFT_01913 0.67 +0.2
28,995 - H281DRAFT_01913 0.67 -0.2
29,052 + H281DRAFT_01913 0.69 +1.2
29,053 - H281DRAFT_01913 0.69 -0.3
29,077 - H281DRAFT_01913 0.70 +0.3
29,077 - H281DRAFT_01913 0.70 +0.1
29,104 - H281DRAFT_01913 0.71 +0.1
29,196 + H281DRAFT_01913 0.74 -1.3
29,196 + H281DRAFT_01913 0.74 -0.6
29,196 + H281DRAFT_01913 0.74 +0.3
29,197 - H281DRAFT_01913 0.74 +0.0
29,197 - H281DRAFT_01913 0.74 +0.3
29,197 - H281DRAFT_01913 0.74 -0.4
29,198 + H281DRAFT_01913 0.74 +0.2
29,199 - H281DRAFT_01913 0.75 +0.5
29,199 - H281DRAFT_01913 0.75 +0.8
29,199 - H281DRAFT_01913 0.75 +1.4
29,199 - H281DRAFT_01913 0.75 -0.5
29,227 + H281DRAFT_01913 0.76 -0.4
29,228 - H281DRAFT_01913 0.76 +1.4
29,332 + H281DRAFT_01913 0.79 +0.2
29,333 - H281DRAFT_01913 0.79 +0.1
29,333 - H281DRAFT_01913 0.79 +0.6
29,333 - H281DRAFT_01913 0.79 +0.8
29,364 + H281DRAFT_01913 0.80 -0.6
29,364 + H281DRAFT_01913 0.80 -1.1
29,364 + H281DRAFT_01913 0.80 -0.1
29,364 + H281DRAFT_01913 0.80 -1.0
29,365 - H281DRAFT_01913 0.80 -0.2
29,397 + H281DRAFT_01913 0.81 -0.1
29,398 - H281DRAFT_01913 0.81 +0.6
29,398 - H281DRAFT_01913 0.81 -0.2
29,424 + H281DRAFT_01913 0.82 +0.3
29,425 - H281DRAFT_01913 0.82 +0.4
29,425 - H281DRAFT_01913 0.82 -0.0
29,425 - H281DRAFT_01913 0.82 -0.2
29,475 + H281DRAFT_01913 0.84 -1.7
29,545 - H281DRAFT_01913 0.87 +0.6
29,606 - H281DRAFT_01913 0.89 -0.8
29,606 - H281DRAFT_01913 0.89 -0.5
29,644 + +0.9
29,645 - -0.9
29,645 - -0.4
29,645 - -0.0
29,646 + +0.1
29,646 + -1.7
29,646 + -0.3
29,647 - +0.3
29,647 - +0.2
29,708 + +1.2
29,708 + -0.1
29,709 - -0.6
29,733 - -0.8
29,736 - -0.6
29,736 - -2.5
29,768 - -2.7
29,771 + -0.5
29,771 + -1.4
29,771 + -1.0
29,772 - -1.4
29,885 + +0.3
29,889 + -0.5
29,889 + +0.7
29,889 + -0.5
29,889 + +0.2
29,922 - -3.1
29,928 + +0.1
30,010 + -3.4
30,011 - -1.4
30,011 - -3.3
30,081 + H281DRAFT_01914 0.11 -3.3
30,081 + H281DRAFT_01914 0.11 -3.3
30,173 + H281DRAFT_01914 0.19 -2.9
30,174 - H281DRAFT_01914 0.19 -2.2
30,174 - H281DRAFT_01914 0.19 -0.5
30,174 - H281DRAFT_01914 0.19 -3.3
30,200 + H281DRAFT_01914 0.22 -2.7
30,200 + H281DRAFT_01914 0.22 -1.7
30,200 + H281DRAFT_01914 0.22 -2.3
30,201 - H281DRAFT_01914 0.22 -0.7
30,201 - H281DRAFT_01914 0.22 -0.9
30,631 + H281DRAFT_01914 0.61 -2.1
30,883 - H281DRAFT_01914 0.85 -3.7

Or see this region's nucleotide sequence