Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01375 and H281DRAFT_01376 are separated by 72 nucleotides H281DRAFT_01376 and H281DRAFT_01377 are separated by 331 nucleotides H281DRAFT_01377 and H281DRAFT_01378 are separated by 62 nucleotides H281DRAFT_01378 and H281DRAFT_01379 are separated by 77 nucleotides
H281DRAFT_01375: H281DRAFT_01375 - LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway, at 219,702 to 221,024
_01375
H281DRAFT_01376: H281DRAFT_01376 - 4-oxalomesaconate tautomerase, at 221,097 to 222,203
_01376
H281DRAFT_01377: H281DRAFT_01377 - hypothetical protein, at 222,535 to 222,825
_01377
H281DRAFT_01378: H281DRAFT_01378 - hypothetical protein, at 222,888 to 223,031
_01378
H281DRAFT_01379: H281DRAFT_01379 - diguanylate cyclase/phosphodiesterase, at 223,109 to 225,451
_01379
Position (kb) 221
222
223 Strain fitness (log2 ratio) -1
0
1 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.149 kb on - strand, within H281DRAFT_01375 at 220.483 kb on - strand, within H281DRAFT_01375 at 221.761 kb on + strand, within H281DRAFT_01376 at 221.762 kb on - strand, within H281DRAFT_01376 at 221.966 kb on - strand, within H281DRAFT_01376 at 221.966 kb on - strand, within H281DRAFT_01376 at 221.966 kb on - strand, within H281DRAFT_01376 at 222.268 kb on - strand at 222.466 kb on + strand at 222.692 kb on - strand, within H281DRAFT_01377 at 222.837 kb on + strand at 222.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 220,149 - H281DRAFT_01375 0.34 +0.6 220,149 - H281DRAFT_01375 0.34 +1.4 220,149 - H281DRAFT_01375 0.34 +0.1 220,483 - H281DRAFT_01375 0.59 +0.3 221,761 + H281DRAFT_01376 0.60 -0.3 221,762 - H281DRAFT_01376 0.60 +0.0 221,966 - H281DRAFT_01376 0.79 +0.3 221,966 - H281DRAFT_01376 0.79 -0.3 221,966 - H281DRAFT_01376 0.79 -0.1 222,268 - +1.0 222,466 + +0.5 222,692 - H281DRAFT_01377 0.54 +0.4 222,837 + -0.1 222,838 - +0.7
Or see this region's nucleotide sequence