Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01139

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01138 and H281DRAFT_01139 overlap by 8 nucleotidesH281DRAFT_01139 and H281DRAFT_01140 overlap by 4 nucleotidesH281DRAFT_01140 and H281DRAFT_01141 overlap by 4 nucleotides H281DRAFT_01138: H281DRAFT_01138 - 2-furoate---CoA ligase, at 1,284,599 to 1,286,215 _01138 H281DRAFT_01139: H281DRAFT_01139 - 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit, at 1,286,208 to 1,286,777 _01139 H281DRAFT_01140: H281DRAFT_01140 - 2-furoyl-CoA dehydrogenase FAD binding subunit, at 1,286,774 to 1,287,595 _01140 H281DRAFT_01141: H281DRAFT_01141 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 1,287,592 to 1,290,654 _01141 Position (kb) 1286 1287Strain fitness (log2 ratio) -1 0 1at 1285.281 kb on + strand, within H281DRAFT_01138at 1286.298 kb on - strand, within H281DRAFT_01139at 1286.502 kb on - strand, within H281DRAFT_01139

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,285,281 + H281DRAFT_01138 0.42 -0.2
1,286,298 - H281DRAFT_01139 0.16 +0.3
1,286,502 - H281DRAFT_01139 0.52 +1.1

Or see this region's nucleotide sequence