Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01040 and H281DRAFT_01041 are separated by 22 nucleotides H281DRAFT_01041 and H281DRAFT_01042 are separated by 23 nucleotides H281DRAFT_01042 and H281DRAFT_01043 overlap by 4 nucleotides H281DRAFT_01043 and H281DRAFT_01044 overlap by 4 nucleotides
H281DRAFT_01040: H281DRAFT_01040 - putative flavoprotein involved in K+ transport, at 1,170,330 to 1,171,622
_01040
H281DRAFT_01041: H281DRAFT_01041 - MSMEG_0570 family protein, at 1,171,645 to 1,171,929
_01041
H281DRAFT_01042: H281DRAFT_01042 - glycosyltransferase, MSMEG_0565 family, at 1,171,953 to 1,173,125
_01042
H281DRAFT_01043: H281DRAFT_01043 - hypothetical protein, at 1,173,122 to 1,174,108
_01043
H281DRAFT_01044: H281DRAFT_01044 - putative N-acetyltransferase, MSMEG_0567 N-terminal domain family, at 1,174,105 to 1,174,668
_01044
Position (kb) 1171
1172
1173
1174 Strain fitness (log2 ratio) -1
0
1 at 1171.464 kb on - strand, within H281DRAFT_01040 at 1171.476 kb on - strand, within H281DRAFT_01040 at 1171.523 kb on - strand at 1172.033 kb on + strand at 1172.034 kb on - strand at 1172.117 kb on + strand, within H281DRAFT_01042 at 1172.433 kb on + strand, within H281DRAFT_01042 at 1173.697 kb on + strand, within H281DRAFT_01043
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,171,464 - H281DRAFT_01040 0.88 +0.5 1,171,476 - H281DRAFT_01040 0.89 +0.5 1,171,523 - -0.0 1,172,033 + +0.6 1,172,034 - +1.0 1,172,117 + H281DRAFT_01042 0.14 +1.3 1,172,433 + H281DRAFT_01042 0.41 +0.8 1,173,697 + H281DRAFT_01043 0.58 +0.6
Or see this region's nucleotide sequence