Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00395 and H281DRAFT_00397 are separated by 450 nucleotides H281DRAFT_00397 and H281DRAFT_00398 are separated by 557 nucleotides
H281DRAFT_00395: H281DRAFT_00395 - hydroxymethylpyrimidine synthase, at 438,100 to 440,031
_00395
H281DRAFT_00397: H281DRAFT_00397 - GreA/GreB family elongation factor, at 440,482 to 440,901
_00397
H281DRAFT_00398: H281DRAFT_00398 - hypothetical protein, at 441,459 to 442,313
_00398
Position (kb) 440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 439.568 kb on + strand, within H281DRAFT_00395 at 439.568 kb on + strand, within H281DRAFT_00395 at 439.604 kb on + strand, within H281DRAFT_00395 at 439.947 kb on - strand at 440.178 kb on + strand at 440.251 kb on + strand at 440.405 kb on - strand at 440.415 kb on + strand at 440.415 kb on + strand at 440.415 kb on + strand at 440.416 kb on - strand at 440.461 kb on + strand at 440.483 kb on + strand at 440.782 kb on + strand, within H281DRAFT_00397 at 440.871 kb on - strand at 441.277 kb on - strand at 441.277 kb on - strand at 441.409 kb on + strand at 441.410 kb on - strand at 441.619 kb on - strand, within H281DRAFT_00398 at 441.638 kb on + strand, within H281DRAFT_00398 at 441.638 kb on + strand, within H281DRAFT_00398 at 441.639 kb on - strand, within H281DRAFT_00398 at 441.822 kb on + strand, within H281DRAFT_00398
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 439,568 + H281DRAFT_00395 0.76 -3.3 439,568 + H281DRAFT_00395 0.76 -1.0 439,604 + H281DRAFT_00395 0.78 -3.0 439,947 - -0.7 440,178 + -0.8 440,251 + -1.2 440,405 - -0.5 440,415 + -0.5 440,415 + +0.3 440,415 + +0.7 440,416 - -0.6 440,461 + -1.3 440,483 + +0.0 440,782 + H281DRAFT_00397 0.71 +0.6 440,871 - -0.0 441,277 - -1.0 441,277 - -1.7 441,409 + -0.7 441,410 - -0.6 441,619 - H281DRAFT_00398 0.19 -0.2 441,638 + H281DRAFT_00398 0.21 -0.7 441,638 + H281DRAFT_00398 0.21 +1.0 441,639 - H281DRAFT_00398 0.21 -0.1 441,822 + H281DRAFT_00398 0.42 -0.1
Or see this region's nucleotide sequence