Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00139

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00137 and H281DRAFT_00138 overlap by 4 nucleotidesH281DRAFT_00138 and H281DRAFT_00139 are separated by 37 nucleotidesH281DRAFT_00139 and H281DRAFT_00140 are separated by 46 nucleotidesH281DRAFT_00140 and H281DRAFT_00141 overlap by 16 nucleotides H281DRAFT_00137: H281DRAFT_00137 - iron complex transport system permease protein, at 142,960 to 144,018 _00137 H281DRAFT_00138: H281DRAFT_00138 - iron complex transport system ATP-binding protein, at 144,015 to 144,854 _00138 H281DRAFT_00139: H281DRAFT_00139 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 144,892 to 145,953 _00139 H281DRAFT_00140: H281DRAFT_00140 - cobalamin-5'-phosphate synthase, at 146,000 to 146,785 _00140 H281DRAFT_00141: H281DRAFT_00141 - alpha-ribazole phosphatase, at 146,770 to 147,360 _00141 Position (kb) 144 145 146Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 143.898 kb on - strand, within H281DRAFT_00137at 144.236 kb on + strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.436 kb on + strand, within H281DRAFT_00138at 144.718 kb on + strand, within H281DRAFT_00138at 144.719 kb on - strand, within H281DRAFT_00138at 144.877 kb on - strandat 144.930 kb on - strandat 144.951 kb on - strandat 145.054 kb on - strand, within H281DRAFT_00139at 145.054 kb on - strand, within H281DRAFT_00139at 145.281 kb on + strand, within H281DRAFT_00139at 145.747 kb on + strand, within H281DRAFT_00139at 145.747 kb on + strandat 145.748 kb on - strand, within H281DRAFT_00139at 145.801 kb on + strand, within H281DRAFT_00139at 145.824 kb on - strand, within H281DRAFT_00139at 145.997 kb on + strandat 145.998 kb on - strandat 145.998 kb on - strandat 145.998 kb on - strandat 145.999 kb on + strandat 146.000 kb on - strandat 146.000 kb on - strandat 146.059 kb on - strandat 146.081 kb on + strand, within H281DRAFT_00140at 146.082 kb on - strand, within H281DRAFT_00140at 146.094 kb on - strand, within H281DRAFT_00140at 146.162 kb on + strand, within H281DRAFT_00140at 146.162 kb on + strand, within H281DRAFT_00140at 146.469 kb on - strand, within H281DRAFT_00140at 146.486 kb on + strand, within H281DRAFT_00140at 146.487 kb on - strand, within H281DRAFT_00140at 146.548 kb on - strand, within H281DRAFT_00140at 146.678 kb on + strand, within H281DRAFT_00140at 146.753 kb on + strandat 146.754 kb on - strandat 146.754 kb on - strandat 146.760 kb on + strandat 146.886 kb on - strand, within H281DRAFT_00141at 146.886 kb on - strand, within H281DRAFT_00141at 146.886 kb on - strand, within H281DRAFT_00141

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
143,898 - H281DRAFT_00137 0.89 +0.5
144,236 + H281DRAFT_00138 0.26 +0.8
144,237 - H281DRAFT_00138 0.26 -1.6
144,237 - H281DRAFT_00138 0.26 +1.7
144,237 - H281DRAFT_00138 0.26 -1.7
144,237 - H281DRAFT_00138 0.26 -1.5
144,237 - H281DRAFT_00138 0.26 -1.9
144,436 + H281DRAFT_00138 0.50 +0.3
144,718 + H281DRAFT_00138 0.84 -0.4
144,719 - H281DRAFT_00138 0.84 +0.2
144,877 - +0.4
144,930 - -2.7
144,951 - -4.6
145,054 - H281DRAFT_00139 0.15 -3.5
145,054 - H281DRAFT_00139 0.15 -2.1
145,281 + H281DRAFT_00139 0.37 -5.1
145,747 + H281DRAFT_00139 0.81 -2.3
145,747 + -1.4
145,748 - H281DRAFT_00139 0.81 -3.6
145,801 + H281DRAFT_00139 0.86 -3.8
145,824 - H281DRAFT_00139 0.88 -3.3
145,997 + -0.2
145,998 - -1.5
145,998 - -2.3
145,998 - -2.0
145,999 + -1.0
146,000 - -1.7
146,000 - -1.0
146,059 - -3.6
146,081 + H281DRAFT_00140 0.10 -2.0
146,082 - H281DRAFT_00140 0.10 -3.9
146,094 - H281DRAFT_00140 0.12 -2.9
146,162 + H281DRAFT_00140 0.21 -2.0
146,162 + H281DRAFT_00140 0.21 +0.1
146,469 - H281DRAFT_00140 0.60 -1.3
146,486 + H281DRAFT_00140 0.62 -1.6
146,487 - H281DRAFT_00140 0.62 -3.7
146,548 - H281DRAFT_00140 0.70 -1.5
146,678 + H281DRAFT_00140 0.86 -0.2
146,753 + -2.6
146,754 - -3.4
146,754 - -5.0
146,760 + +1.4
146,886 - H281DRAFT_00141 0.20 -3.1
146,886 - H281DRAFT_00141 0.20 -3.1
146,886 - H281DRAFT_00141 0.20 -2.0

Or see this region's nucleotide sequence