Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00073

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00072 and H281DRAFT_00073 overlap by 50 nucleotidesH281DRAFT_00073 and H281DRAFT_00074 are separated by 292 nucleotides H281DRAFT_00072: H281DRAFT_00072 - hypothetical protein, at 73,807 to 74,418 _00072 H281DRAFT_00073: H281DRAFT_00073 - hypothetical protein, at 74,369 to 74,494 _00073 H281DRAFT_00074: H281DRAFT_00074 - UDP-galactose 4-epimerase, at 74,787 to 75,809 _00074 Position (kb) 74 75Strain fitness (log2 ratio) -2 -1 0 1at 73.456 kb on + strandat 73.456 kb on + strandat 73.457 kb on - strandat 73.472 kb on + strandat 73.473 kb on - strandat 73.488 kb on - strandat 73.488 kb on - strandat 73.570 kb on + strandat 73.570 kb on + strandat 73.570 kb on + strandat 73.571 kb on - strandat 73.641 kb on + strandat 73.644 kb on - strandat 73.666 kb on + strandat 73.720 kb on - strandat 73.851 kb on - strandat 73.983 kb on - strand, within H281DRAFT_00072at 74.107 kb on + strand, within H281DRAFT_00072at 74.107 kb on + strand, within H281DRAFT_00072at 74.108 kb on - strand, within H281DRAFT_00072at 74.108 kb on - strand, within H281DRAFT_00072at 74.327 kb on - strand, within H281DRAFT_00072at 74.385 kb on + strandat 74.385 kb on + strandat 74.399 kb on - strandat 74.416 kb on + strandat 74.417 kb on - strandat 74.451 kb on + strand, within H281DRAFT_00073at 74.620 kb on + strandat 74.620 kb on + strandat 74.646 kb on + strandat 74.647 kb on - strandat 74.647 kb on - strandat 75.101 kb on + strand, within H281DRAFT_00074at 75.102 kb on - strand, within H281DRAFT_00074at 75.102 kb on - strand, within H281DRAFT_00074at 75.193 kb on + strand, within H281DRAFT_00074at 75.416 kb on - strand, within H281DRAFT_00074

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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73,456 + +1.4
73,456 + +0.3
73,457 - +0.5
73,472 + +0.3
73,473 - +1.1
73,488 - +0.3
73,488 - -0.0
73,570 + +0.6
73,570 + +0.6
73,570 + -0.8
73,571 - -0.3
73,641 + -0.2
73,644 - -0.5
73,666 + +0.2
73,720 - +1.3
73,851 - -0.0
73,983 - H281DRAFT_00072 0.29 -0.4
74,107 + H281DRAFT_00072 0.49 +1.3
74,107 + H281DRAFT_00072 0.49 -1.3
74,108 - H281DRAFT_00072 0.49 -0.5
74,108 - H281DRAFT_00072 0.49 +0.1
74,327 - H281DRAFT_00072 0.85 -0.1
74,385 + -0.5
74,385 + -0.6
74,399 - -1.3
74,416 + +0.5
74,417 - +0.5
74,451 + H281DRAFT_00073 0.65 -0.2
74,620 + +0.0
74,620 + +0.1
74,646 + +0.9
74,647 - +0.6
74,647 - +0.2
75,101 + H281DRAFT_00074 0.31 -2.3
75,102 - H281DRAFT_00074 0.31 -1.2
75,102 - H281DRAFT_00074 0.31 -0.9
75,193 + H281DRAFT_00074 0.40 -0.2
75,416 - H281DRAFT_00074 0.61 +1.6

Or see this region's nucleotide sequence