Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_862 and HP15_863 are separated by 142 nucleotides HP15_863 and HP15_864 are separated by 138 nucleotides
HP15_862: HP15_862 - signal transduction protein containing a membrane domain, an EAL and a GGDEF domain, at 880,993 to 884,754
_862
HP15_863: HP15_863 - ribonuclease Z, at 884,897 to 885,868
_863
HP15_864: HP15_864 - enoyl-CoA hydratase/isomerase family protein, at 886,007 to 886,852
_864
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 883.897 kb on - strand, within HP15_862 at 883.902 kb on + strand, within HP15_862 at 883.920 kb on - strand, within HP15_862 at 883.920 kb on - strand, within HP15_862 at 883.942 kb on + strand, within HP15_862 at 883.945 kb on + strand, within HP15_862 at 884.151 kb on + strand, within HP15_862 at 884.151 kb on + strand, within HP15_862 at 884.171 kb on + strand, within HP15_862 at 884.179 kb on - strand, within HP15_862 at 884.252 kb on + strand, within HP15_862 at 884.270 kb on - strand, within HP15_862 at 884.270 kb on - strand, within HP15_862 at 884.295 kb on + strand, within HP15_862 at 884.386 kb on - strand at 884.466 kb on - strand at 884.473 kb on - strand at 884.497 kb on + strand at 884.579 kb on - strand at 884.653 kb on - strand at 884.653 kb on - strand at 884.677 kb on + strand at 884.685 kb on + strand at 884.733 kb on + strand at 884.741 kb on - strand at 884.743 kb on + strand at 884.771 kb on - strand at 884.946 kb on - strand at 885.013 kb on - strand, within HP15_863 at 885.069 kb on - strand, within HP15_863 at 885.120 kb on + strand, within HP15_863 at 885.137 kb on + strand, within HP15_863 at 885.210 kb on + strand, within HP15_863 at 885.341 kb on - strand, within HP15_863 at 885.381 kb on + strand, within HP15_863 at 885.386 kb on + strand, within HP15_863 at 885.394 kb on - strand, within HP15_863 at 885.460 kb on - strand, within HP15_863 at 885.461 kb on - strand, within HP15_863 at 885.500 kb on + strand, within HP15_863 at 885.552 kb on + strand, within HP15_863 at 885.613 kb on - strand, within HP15_863 at 885.613 kb on - strand, within HP15_863 at 885.628 kb on + strand, within HP15_863 at 885.761 kb on + strand, within HP15_863 at 885.786 kb on - strand at 885.868 kb on + strand at 885.908 kb on + strand at 885.912 kb on + strand at 885.913 kb on + strand at 886.087 kb on - strand at 886.117 kb on + strand, within HP15_864 at 886.130 kb on - strand, within HP15_864 at 886.222 kb on - strand, within HP15_864 at 886.281 kb on + strand, within HP15_864 at 886.304 kb on + strand, within HP15_864 at 886.423 kb on - strand, within HP15_864 at 886.522 kb on + strand, within HP15_864 at 886.615 kb on + strand, within HP15_864 at 886.694 kb on + strand, within HP15_864 at 886.706 kb on + strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.714 kb on - strand, within HP15_864 at 886.716 kb on + strand, within HP15_864 at 886.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 883,897 - HP15_862 0.77 -0.3 883,902 + HP15_862 0.77 -0.6 883,920 - HP15_862 0.78 -0.1 883,920 - HP15_862 0.78 +0.3 883,942 + HP15_862 0.78 +0.8 883,945 + HP15_862 0.78 +0.4 884,151 + HP15_862 0.84 -0.7 884,151 + HP15_862 0.84 -0.6 884,171 + HP15_862 0.84 +1.4 884,179 - HP15_862 0.85 -1.4 884,252 + HP15_862 0.87 -0.3 884,270 - HP15_862 0.87 -0.5 884,270 - HP15_862 0.87 -0.5 884,295 + HP15_862 0.88 -0.6 884,386 - -0.1 884,466 - +0.9 884,473 - +1.8 884,497 + +0.4 884,579 - +0.9 884,653 - +0.2 884,653 - -0.0 884,677 + +0.3 884,685 + +0.5 884,733 + +0.3 884,741 - +0.4 884,743 + -0.6 884,771 - -0.5 884,946 - +0.2 885,013 - HP15_863 0.12 +0.3 885,069 - HP15_863 0.18 -0.7 885,120 + HP15_863 0.23 -0.7 885,137 + HP15_863 0.25 +0.3 885,210 + HP15_863 0.32 +0.2 885,341 - HP15_863 0.46 +0.1 885,381 + HP15_863 0.50 -0.6 885,386 + HP15_863 0.50 +0.8 885,394 - HP15_863 0.51 -1.0 885,460 - HP15_863 0.58 +0.5 885,461 - HP15_863 0.58 -0.4 885,500 + HP15_863 0.62 +0.2 885,552 + HP15_863 0.67 +0.2 885,613 - HP15_863 0.74 +0.6 885,613 - HP15_863 0.74 -0.7 885,628 + HP15_863 0.75 -0.5 885,761 + HP15_863 0.89 -0.2 885,786 - -0.2 885,868 + +0.4 885,908 + -2.9 885,912 + +0.6 885,913 + +0.1 886,087 - +0.6 886,117 + HP15_864 0.13 -0.0 886,130 - HP15_864 0.15 +0.9 886,222 - HP15_864 0.25 -0.7 886,281 + HP15_864 0.32 -0.3 886,304 + HP15_864 0.35 +0.7 886,423 - HP15_864 0.49 -0.5 886,522 + HP15_864 0.61 -1.4 886,615 + HP15_864 0.72 -0.5 886,694 + HP15_864 0.81 -0.3 886,706 + HP15_864 0.83 +1.6 886,714 - HP15_864 0.84 +0.5 886,714 - HP15_864 0.84 -1.4 886,716 + HP15_864 0.84 +0.1 886,790 + -0.2
Or see this region's nucleotide sequence