Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08760 and PGA1_c08770 overlap by 8 nucleotides PGA1_c08770 and PGA1_c08780 are separated by 38 nucleotides PGA1_c08780 and PGA1_c08790 are separated by 1 nucleotides PGA1_c08790 and PGA1_c08800 are separated by 130 nucleotides
PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303
_c08760
PGA1_c08770: PGA1_c08770 - putative sarcosine oxidase, subunit gamma, at 906,296 to 906,841
_c08770
PGA1_c08780: PGA1_c08780 - hypothetical protein, at 906,880 to 907,218
_c08780
PGA1_c08790: PGA1_c08790 - DNA primase DnaG, at 907,220 to 909,469
_c08790
PGA1_c08800: PGA1_c08800 - RNA polymerase sigma factor RpoD, at 909,600 to 911,588
_c08800
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 906.223 kb on - strand at 906.225 kb on - strand at 906.240 kb on - strand at 906.269 kb on + strand at 906.436 kb on + strand, within PGA1_c08770 at 906.452 kb on + strand, within PGA1_c08770 at 906.522 kb on + strand, within PGA1_c08770 at 906.530 kb on - strand, within PGA1_c08770 at 906.551 kb on + strand, within PGA1_c08770 at 906.555 kb on - strand, within PGA1_c08770 at 906.570 kb on + strand, within PGA1_c08770 at 906.613 kb on + strand, within PGA1_c08770 at 906.623 kb on + strand, within PGA1_c08770 at 906.630 kb on + strand, within PGA1_c08770 at 906.679 kb on + strand, within PGA1_c08770 at 906.688 kb on + strand, within PGA1_c08770 at 906.886 kb on - strand at 906.887 kb on + strand at 906.969 kb on + strand, within PGA1_c08780 at 907.060 kb on + strand, within PGA1_c08780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 906,223 - -1.0 906,225 - +0.6 906,240 - +0.0 906,269 + +0.2 906,436 + PGA1_c08770 0.26 -0.8 906,452 + PGA1_c08770 0.29 -0.7 906,522 + PGA1_c08770 0.41 +0.4 906,530 - PGA1_c08770 0.43 +0.0 906,551 + PGA1_c08770 0.47 -0.1 906,555 - PGA1_c08770 0.47 +1.3 906,570 + PGA1_c08770 0.50 +0.9 906,613 + PGA1_c08770 0.58 +0.2 906,623 + PGA1_c08770 0.60 +0.3 906,630 + PGA1_c08770 0.61 -0.2 906,679 + PGA1_c08770 0.70 -0.7 906,688 + PGA1_c08770 0.72 -0.6 906,886 - -1.6 906,887 + -1.5 906,969 + PGA1_c08780 0.26 -3.4 907,060 + PGA1_c08780 0.53 +0.2
Or see this region's nucleotide sequence