Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_553 and HP15_552 are separated by 0 nucleotides HP15_552 and HP15_554 are separated by 135 nucleotides HP15_554 and HP15_555 are separated by 705 nucleotides
HP15_553: HP15_553 - LppC family lipoprotein, at 571,436 to 573,097
_553
HP15_552: HP15_552 - hypothetical protein, at 573,098 to 573,304
_552
HP15_554: HP15_554 - tetrapyrrole methylase family protein, at 573,440 to 574,336
_554
HP15_555: HP15_555 - MraZ protein, at 575,042 to 575,494
_555
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 573.394 kb on + strand at 573.416 kb on - strand at 573.430 kb on + strand at 573.438 kb on - strand at 573.544 kb on + strand, within HP15_554 at 573.557 kb on + strand, within HP15_554 at 573.662 kb on - strand, within HP15_554 at 573.694 kb on - strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.787 kb on + strand, within HP15_554 at 573.792 kb on + strand, within HP15_554 at 573.801 kb on + strand, within HP15_554 at 573.828 kb on + strand, within HP15_554 at 573.834 kb on - strand, within HP15_554 at 573.838 kb on + strand, within HP15_554 at 573.935 kb on - strand, within HP15_554 at 574.016 kb on - strand, within HP15_554 at 574.048 kb on - strand, within HP15_554 at 574.082 kb on - strand, within HP15_554 at 574.213 kb on - strand, within HP15_554 at 574.269 kb on + strand at 574.269 kb on + strand at 574.332 kb on + strand at 574.385 kb on - strand at 575.026 kb on + strand at 575.131 kb on + strand, within HP15_555 at 575.237 kb on + strand, within HP15_555
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 573,394 + +0.0 573,416 - -0.4 573,430 + +0.2 573,438 - -0.6 573,544 + HP15_554 0.12 -1.2 573,557 + HP15_554 0.13 -1.0 573,662 - HP15_554 0.25 -2.0 573,694 - HP15_554 0.28 -1.4 573,703 + HP15_554 0.29 -1.6 573,703 + HP15_554 0.29 -1.1 573,703 + HP15_554 0.29 -0.8 573,703 + HP15_554 0.29 -1.8 573,711 - HP15_554 0.30 -0.3 573,711 - HP15_554 0.30 -2.0 573,711 - HP15_554 0.30 -0.3 573,787 + HP15_554 0.39 -1.3 573,792 + HP15_554 0.39 -1.2 573,801 + HP15_554 0.40 -2.7 573,828 + HP15_554 0.43 -2.8 573,834 - HP15_554 0.44 -1.4 573,838 + HP15_554 0.44 -2.6 573,935 - HP15_554 0.55 -0.7 574,016 - HP15_554 0.64 -0.8 574,048 - HP15_554 0.68 -1.8 574,082 - HP15_554 0.72 -1.1 574,213 - HP15_554 0.86 -3.0 574,269 + -1.8 574,269 + -1.6 574,332 + -0.7 574,385 - -0.0 575,026 + -1.7 575,131 + HP15_555 0.20 -0.2 575,237 + HP15_555 0.43 -0.9
Or see this region's nucleotide sequence