Strain Fitness in Marinobacter adhaerens HP15 around HP15_3008

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3007 and HP15_3008 overlap by 4 nucleotidesHP15_3008 and HP15_3009 overlap by 4 nucleotidesHP15_3009 and HP15_3010 are separated by 9 nucleotides HP15_3007: HP15_3007 - carboxyl-terminal protease family protein, at 3,152,084 to 3,153,490 _3007 HP15_3008: HP15_3008 - secreted protein containing DUF610, YibQ, at 3,153,487 to 3,154,302 _3008 HP15_3009: HP15_3009 - protein containing histidine biosynthesis, HisF domain, at 3,154,299 to 3,155,072 _3009 HP15_3010: HP15_3010 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 3,155,082 to 3,155,819 _3010 Position (kb) 3153 3154 3155Strain fitness (log2 ratio) -3 -2 -1 0 1at 3152.526 kb on + strand, within HP15_3007at 3152.613 kb on - strand, within HP15_3007at 3152.769 kb on + strand, within HP15_3007at 3152.803 kb on + strand, within HP15_3007at 3152.811 kb on - strand, within HP15_3007at 3152.811 kb on - strand, within HP15_3007at 3152.856 kb on + strand, within HP15_3007at 3152.903 kb on + strand, within HP15_3007at 3152.903 kb on + strand, within HP15_3007at 3152.905 kb on + strand, within HP15_3007at 3152.916 kb on + strand, within HP15_3007at 3153.080 kb on + strand, within HP15_3007at 3153.088 kb on - strand, within HP15_3007at 3153.193 kb on + strand, within HP15_3007at 3153.195 kb on + strand, within HP15_3007at 3153.201 kb on - strand, within HP15_3007at 3153.201 kb on - strand, within HP15_3007at 3153.351 kb on - strandat 3153.503 kb on - strandat 3153.505 kb on + strandat 3153.700 kb on - strand, within HP15_3008at 3153.815 kb on - strand, within HP15_3008at 3153.832 kb on + strand, within HP15_3008at 3153.881 kb on - strand, within HP15_3008at 3153.917 kb on - strand, within HP15_3008at 3153.960 kb on - strand, within HP15_3008at 3154.040 kb on + strand, within HP15_3008at 3154.149 kb on + strand, within HP15_3008at 3154.215 kb on + strand, within HP15_3008at 3154.267 kb on - strandat 3154.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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3,152,526 + HP15_3007 0.31 +0.2
3,152,613 - HP15_3007 0.38 -0.7
3,152,769 + HP15_3007 0.49 -0.7
3,152,803 + HP15_3007 0.51 +0.4
3,152,811 - HP15_3007 0.52 +1.4
3,152,811 - HP15_3007 0.52 -0.6
3,152,856 + HP15_3007 0.55 +0.0
3,152,903 + HP15_3007 0.58 +0.7
3,152,903 + HP15_3007 0.58 -0.1
3,152,905 + HP15_3007 0.58 -0.7
3,152,916 + HP15_3007 0.59 +0.2
3,153,080 + HP15_3007 0.71 +0.3
3,153,088 - HP15_3007 0.71 -1.2
3,153,193 + HP15_3007 0.79 +1.1
3,153,195 + HP15_3007 0.79 +0.1
3,153,201 - HP15_3007 0.79 -3.7
3,153,201 - HP15_3007 0.79 -0.8
3,153,351 - -0.2
3,153,503 - -0.4
3,153,505 + -0.1
3,153,700 - HP15_3008 0.26 -0.7
3,153,815 - HP15_3008 0.40 -0.5
3,153,832 + HP15_3008 0.42 -0.3
3,153,881 - HP15_3008 0.48 -0.0
3,153,917 - HP15_3008 0.53 -0.0
3,153,960 - HP15_3008 0.58 -2.4
3,154,040 + HP15_3008 0.68 +0.1
3,154,149 + HP15_3008 0.81 -0.3
3,154,215 + HP15_3008 0.89 -1.0
3,154,267 - -0.3
3,154,320 - +0.9

Or see this region's nucleotide sequence