Strain Fitness in Marinobacter adhaerens HP15 around HP15_3006

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3005 and HP15_3006 are separated by 20 nucleotidesHP15_3006 and HP15_3007 are separated by 97 nucleotides HP15_3005: HP15_3005 - phosphoglyceromutase, at 3,149,282 to 3,150,832 _3005 HP15_3006: HP15_3006 - peptidase M23B, at 3,150,853 to 3,151,986 _3006 HP15_3007: HP15_3007 - carboxyl-terminal protease family protein, at 3,152,084 to 3,153,490 _3007 Position (kb) 3150 3151 3152Strain fitness (log2 ratio) -3 -2 -1 0 1at 3150.825 kb on - strandat 3150.853 kb on + strandat 3150.885 kb on + strandat 3150.908 kb on - strandat 3150.928 kb on - strandat 3150.956 kb on + strandat 3151.012 kb on - strand, within HP15_3006at 3151.113 kb on + strand, within HP15_3006at 3151.187 kb on - strand, within HP15_3006at 3151.268 kb on - strand, within HP15_3006at 3151.271 kb on + strand, within HP15_3006at 3151.304 kb on + strand, within HP15_3006at 3151.340 kb on + strand, within HP15_3006at 3151.380 kb on + strand, within HP15_3006at 3151.388 kb on - strand, within HP15_3006at 3151.390 kb on + strand, within HP15_3006at 3151.572 kb on - strand, within HP15_3006at 3151.617 kb on + strand, within HP15_3006at 3151.625 kb on - strand, within HP15_3006at 3151.646 kb on - strand, within HP15_3006at 3151.647 kb on - strand, within HP15_3006at 3151.729 kb on + strand, within HP15_3006at 3151.772 kb on + strand, within HP15_3006at 3151.780 kb on - strand, within HP15_3006at 3151.780 kb on - strand, within HP15_3006at 3151.929 kb on - strandat 3151.936 kb on - strandat 3151.956 kb on + strandat 3151.969 kb on - strandat 3152.023 kb on + strandat 3152.025 kb on - strandat 3152.092 kb on + strandat 3152.105 kb on + strandat 3152.105 kb on - strandat 3152.175 kb on - strandat 3152.175 kb on - strandat 3152.175 kb on - strandat 3152.187 kb on - strandat 3152.238 kb on + strand, within HP15_3007at 3152.526 kb on + strand, within HP15_3007at 3152.613 kb on - strand, within HP15_3007at 3152.769 kb on + strand, within HP15_3007at 3152.803 kb on + strand, within HP15_3007at 3152.811 kb on - strand, within HP15_3007at 3152.811 kb on - strand, within HP15_3007at 3152.856 kb on + strand, within HP15_3007at 3152.903 kb on + strand, within HP15_3007at 3152.903 kb on + strand, within HP15_3007at 3152.905 kb on + strand, within HP15_3007at 3152.916 kb on + strand, within HP15_3007

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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3,150,825 - -1.4
3,150,853 + -0.1
3,150,885 + -1.2
3,150,908 - -1.0
3,150,928 - -1.8
3,150,956 + -2.7
3,151,012 - HP15_3006 0.14 -0.6
3,151,113 + HP15_3006 0.23 -1.9
3,151,187 - HP15_3006 0.29 -1.2
3,151,268 - HP15_3006 0.37 -2.4
3,151,271 + HP15_3006 0.37 -1.7
3,151,304 + HP15_3006 0.40 -2.2
3,151,340 + HP15_3006 0.43 -1.6
3,151,380 + HP15_3006 0.46 -1.2
3,151,388 - HP15_3006 0.47 -0.7
3,151,390 + HP15_3006 0.47 -1.9
3,151,572 - HP15_3006 0.63 -1.5
3,151,617 + HP15_3006 0.67 -2.6
3,151,625 - HP15_3006 0.68 -2.1
3,151,646 - HP15_3006 0.70 -1.8
3,151,647 - HP15_3006 0.70 -2.2
3,151,729 + HP15_3006 0.77 -1.6
3,151,772 + HP15_3006 0.81 +0.8
3,151,780 - HP15_3006 0.82 -2.2
3,151,780 - HP15_3006 0.82 -0.6
3,151,929 - -2.0
3,151,936 - -3.3
3,151,956 + -0.8
3,151,969 - -0.9
3,152,023 + -0.9
3,152,025 - -0.5
3,152,092 + +0.2
3,152,105 + -0.3
3,152,105 - -0.4
3,152,175 - -0.2
3,152,175 - -0.1
3,152,175 - -0.8
3,152,187 - +0.1
3,152,238 + HP15_3007 0.11 -0.5
3,152,526 + HP15_3007 0.31 +0.2
3,152,613 - HP15_3007 0.38 -0.7
3,152,769 + HP15_3007 0.49 -0.7
3,152,803 + HP15_3007 0.51 +0.4
3,152,811 - HP15_3007 0.52 +1.4
3,152,811 - HP15_3007 0.52 -0.6
3,152,856 + HP15_3007 0.55 +0.0
3,152,903 + HP15_3007 0.58 +0.7
3,152,903 + HP15_3007 0.58 -0.1
3,152,905 + HP15_3007 0.58 -0.7
3,152,916 + HP15_3007 0.59 +0.2

Or see this region's nucleotide sequence