Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2693 and HP15_2694 overlap by 4 nucleotides HP15_2694 and HP15_2695 overlap by 4 nucleotides HP15_2695 and HP15_2696 are separated by 59 nucleotides
HP15_2693: HP15_2693 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-) (from data) , at 2,845,117 to 2,846,637
_2693
HP15_2694: HP15_2694 - phenylacetic acid degradation protein PaaD, at 2,846,634 to 2,847,080
_2694
HP15_2695: HP15_2695 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (from data) , at 2,847,077 to 2,848,324
_2695
HP15_2696: HP15_2696 - phenylacetate-CoA ligase, at 2,848,384 to 2,849,694
_2696
Position (kb)
2847
2848
2849 Strain fitness (log2 ratio)
-1
0
1 at 2846.088 kb on + strand, within HP15_2693 at 2846.134 kb on - strand, within HP15_2693 at 2846.425 kb on + strand, within HP15_2693 at 2846.481 kb on - strand, within HP15_2693 at 2846.481 kb on - strand, within HP15_2693 at 2846.483 kb on + strand, within HP15_2693 at 2846.494 kb on + strand at 2846.582 kb on + strand at 2846.678 kb on + strand at 2846.712 kb on + strand, within HP15_2694 at 2846.741 kb on + strand, within HP15_2694 at 2846.741 kb on + strand, within HP15_2694 at 2846.805 kb on + strand, within HP15_2694 at 2846.814 kb on - strand, within HP15_2694 at 2846.890 kb on + strand, within HP15_2694 at 2846.988 kb on - strand, within HP15_2694 at 2847.010 kb on + strand, within HP15_2694 at 2847.018 kb on - strand, within HP15_2694 at 2847.028 kb on - strand, within HP15_2694 at 2847.034 kb on + strand, within HP15_2694 at 2847.140 kb on - strand at 2847.154 kb on + strand at 2847.221 kb on + strand, within HP15_2695 at 2847.229 kb on - strand, within HP15_2695 at 2847.259 kb on - strand, within HP15_2695 at 2847.269 kb on - strand, within HP15_2695 at 2847.422 kb on + strand, within HP15_2695 at 2847.457 kb on - strand, within HP15_2695 at 2847.642 kb on + strand, within HP15_2695 at 2847.662 kb on - strand, within HP15_2695 at 2847.900 kb on + strand, within HP15_2695 at 2847.908 kb on - strand, within HP15_2695 at 2847.978 kb on - strand, within HP15_2695 at 2848.073 kb on + strand, within HP15_2695 at 2848.078 kb on + strand, within HP15_2695 at 2848.179 kb on + strand, within HP15_2695 at 2848.202 kb on - strand at 2848.280 kb on - strand at 2848.282 kb on + strand at 2848.350 kb on + strand at 2848.374 kb on + strand at 2848.436 kb on + strand at 2848.467 kb on - strand at 2848.522 kb on + strand, within HP15_2696 at 2848.706 kb on + strand, within HP15_2696 at 2848.706 kb on + strand, within HP15_2696 at 2848.777 kb on + strand, within HP15_2696 at 2848.781 kb on + strand, within HP15_2696 at 2848.798 kb on + strand, within HP15_2696 at 2848.810 kb on + strand, within HP15_2696 at 2848.813 kb on - strand, within HP15_2696 at 2848.873 kb on - strand, within HP15_2696 at 2849.046 kb on + strand, within HP15_2696 at 2849.100 kb on + strand, within HP15_2696 at 2849.134 kb on - strand, within HP15_2696 at 2849.254 kb on + strand, within HP15_2696 at 2849.256 kb on - strand, within HP15_2696 at 2849.303 kb on + strand, within HP15_2696 at 2849.311 kb on - strand, within HP15_2696
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 2,846,088 + HP15_2693 0.64 -0.2 2,846,134 - HP15_2693 0.67 -0.1 2,846,425 + HP15_2693 0.86 -0.0 2,846,481 - HP15_2693 0.90 +0.0 2,846,481 - HP15_2693 0.90 -0.7 2,846,483 + HP15_2693 0.90 +0.4 2,846,494 + +0.5 2,846,582 + -0.5 2,846,678 + -0.0 2,846,712 + HP15_2694 0.17 +0.3 2,846,741 + HP15_2694 0.24 +0.6 2,846,741 + HP15_2694 0.24 +0.4 2,846,805 + HP15_2694 0.38 +0.2 2,846,814 - HP15_2694 0.40 +0.5 2,846,890 + HP15_2694 0.57 -0.2 2,846,988 - HP15_2694 0.79 +0.4 2,847,010 + HP15_2694 0.84 +0.4 2,847,018 - HP15_2694 0.86 +0.1 2,847,028 - HP15_2694 0.88 +0.2 2,847,034 + HP15_2694 0.89 +0.1 2,847,140 - -0.3 2,847,154 + +0.7 2,847,221 + HP15_2695 0.12 -0.9 2,847,229 - HP15_2695 0.12 +0.3 2,847,259 - HP15_2695 0.15 +0.1 2,847,269 - HP15_2695 0.15 +0.6 2,847,422 + HP15_2695 0.28 +0.6 2,847,457 - HP15_2695 0.30 +0.5 2,847,642 + HP15_2695 0.45 +0.6 2,847,662 - HP15_2695 0.47 +0.4 2,847,900 + HP15_2695 0.66 +0.1 2,847,908 - HP15_2695 0.67 -0.2 2,847,978 - HP15_2695 0.72 +0.3 2,848,073 + HP15_2695 0.80 +0.7 2,848,078 + HP15_2695 0.80 +0.0 2,848,179 + HP15_2695 0.88 +0.6 2,848,202 - +1.3 2,848,280 - -0.4 2,848,282 + -1.2 2,848,350 + -0.6 2,848,374 + -0.1 2,848,436 + -0.6 2,848,467 - +0.2 2,848,522 + HP15_2696 0.11 -0.7 2,848,706 + HP15_2696 0.25 -0.9 2,848,706 + HP15_2696 0.25 -0.6 2,848,777 + HP15_2696 0.30 +0.5 2,848,781 + HP15_2696 0.30 +0.4 2,848,798 + HP15_2696 0.32 -0.3 2,848,810 + HP15_2696 0.32 +0.4 2,848,813 - HP15_2696 0.33 +0.6 2,848,873 - HP15_2696 0.37 +0.1 2,849,046 + HP15_2696 0.50 +0.7 2,849,100 + HP15_2696 0.55 -0.2 2,849,134 - HP15_2696 0.57 -0.2 2,849,254 + HP15_2696 0.66 +0.5 2,849,256 - HP15_2696 0.67 -0.1 2,849,303 + HP15_2696 0.70 -0.7 2,849,311 - HP15_2696 0.71 -0.3
Or see this region's nucleotide sequence