Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2689 and HP15_2690 are separated by 266 nucleotides HP15_2690 and HP15_2691 are separated by 32 nucleotides HP15_2691 and HP15_2692 are separated by 261 nucleotides
HP15_2689: HP15_2689 - NAD-specific glutamate dehydrogenase, at 2,839,200 to 2,842,586
_2689
HP15_2690: HP15_2690 - transcriptional regulator, AsnC family, at 2,842,853 to 2,843,305
_2690
HP15_2691: HP15_2691 - carbonic anhydrase/acetyltransferase, isoleucine patch superfamily, at 2,843,338 to 2,844,060
_2691
HP15_2692: HP15_2692 - phenylacetate degradation probable enoyl-CoA hydratase paaB, at 2,844,322 to 2,845,113
_2692
Position (kb)
2843
2844
2845 Strain fitness (log2 ratio)
-1
0
1 at 2842.440 kb on - strand at 2842.440 kb on - strand at 2842.442 kb on + strand at 2842.529 kb on + strand at 2842.530 kb on - strand at 2842.598 kb on + strand at 2842.598 kb on + strand at 2842.730 kb on - strand at 2842.895 kb on + strand at 2842.940 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2843.107 kb on + strand, within HP15_2690 at 2843.252 kb on + strand, within HP15_2690 at 2843.284 kb on + strand at 2843.386 kb on + strand at 2843.410 kb on - strand at 2843.468 kb on + strand, within HP15_2691 at 2843.558 kb on + strand, within HP15_2691 at 2843.561 kb on - strand, within HP15_2691 at 2843.566 kb on - strand, within HP15_2691 at 2843.690 kb on - strand, within HP15_2691 at 2843.753 kb on + strand, within HP15_2691 at 2843.758 kb on + strand, within HP15_2691 at 2843.885 kb on + strand, within HP15_2691 at 2843.915 kb on - strand, within HP15_2691 at 2843.947 kb on - strand, within HP15_2691 at 2843.972 kb on + strand, within HP15_2691 at 2844.152 kb on + strand at 2844.305 kb on + strand at 2844.357 kb on + strand at 2844.365 kb on - strand at 2844.365 kb on - strand at 2844.373 kb on + strand at 2844.374 kb on + strand at 2844.446 kb on - strand, within HP15_2692 at 2844.464 kb on - strand, within HP15_2692 at 2844.524 kb on - strand, within HP15_2692 at 2844.599 kb on + strand, within HP15_2692 at 2844.626 kb on - strand, within HP15_2692 at 2844.679 kb on - strand, within HP15_2692 at 2844.684 kb on - strand, within HP15_2692 at 2844.801 kb on + strand, within HP15_2692 at 2844.809 kb on - strand, within HP15_2692 at 2844.809 kb on - strand, within HP15_2692 at 2844.809 kb on - strand, within HP15_2692 at 2844.810 kb on - strand, within HP15_2692 at 2844.834 kb on - strand, within HP15_2692 at 2844.839 kb on - strand, within HP15_2692
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 2,842,440 - -0.5 2,842,440 - -0.3 2,842,442 + +0.3 2,842,529 + +1.3 2,842,530 - +0.3 2,842,598 + +0.6 2,842,598 + +0.5 2,842,730 - +0.4 2,842,895 + -0.7 2,842,940 - HP15_2690 0.19 +0.0 2,842,988 - HP15_2690 0.30 -0.6 2,842,988 - HP15_2690 0.30 +1.5 2,842,988 - HP15_2690 0.30 +0.3 2,843,107 + HP15_2690 0.56 -1.4 2,843,252 + HP15_2690 0.88 -0.1 2,843,284 + +0.5 2,843,386 + -0.5 2,843,410 - -1.3 2,843,468 + HP15_2691 0.18 -0.7 2,843,558 + HP15_2691 0.30 -0.2 2,843,561 - HP15_2691 0.31 -1.3 2,843,566 - HP15_2691 0.32 -0.0 2,843,690 - HP15_2691 0.49 +0.2 2,843,753 + HP15_2691 0.57 -0.8 2,843,758 + HP15_2691 0.58 -0.7 2,843,885 + HP15_2691 0.76 -1.1 2,843,915 - HP15_2691 0.80 +0.4 2,843,947 - HP15_2691 0.84 +0.3 2,843,972 + HP15_2691 0.88 +0.1 2,844,152 + -0.4 2,844,305 + -1.1 2,844,357 + +1.7 2,844,365 - -0.5 2,844,365 - +0.7 2,844,373 + +0.0 2,844,374 + +1.6 2,844,446 - HP15_2692 0.16 +1.0 2,844,464 - HP15_2692 0.18 -0.2 2,844,524 - HP15_2692 0.26 +1.6 2,844,599 + HP15_2692 0.35 -0.5 2,844,626 - HP15_2692 0.38 +0.5 2,844,679 - HP15_2692 0.45 -0.2 2,844,684 - HP15_2692 0.46 +0.2 2,844,801 + HP15_2692 0.60 +1.0 2,844,809 - HP15_2692 0.61 +0.4 2,844,809 - HP15_2692 0.61 -0.1 2,844,809 - HP15_2692 0.61 +1.4 2,844,810 - HP15_2692 0.62 +0.8 2,844,834 - HP15_2692 0.65 -0.2 2,844,839 - HP15_2692 0.65 +0.5
Or see this region's nucleotide sequence