Strain Fitness in Marinobacter adhaerens HP15 around HP15_1882

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1879 and HP15_1880 overlap by 1 nucleotidesHP15_1880 and HP15_1881 overlap by 4 nucleotidesHP15_1881 and HP15_1882 overlap by 4 nucleotidesHP15_1882 and HP15_1883 are separated by 31 nucleotidesHP15_1883 and HP15_1884 are separated by 31 nucleotidesHP15_1884 and HP15_1885 are separated by 3 nucleotides HP15_1879: HP15_1879 - conserved hypothetical protein, membrane, at 1,985,199 to 1,985,543 _1879 HP15_1880: HP15_1880 - uncharacterized conserved protein UCP006173, at 1,985,543 to 1,985,989 _1880 HP15_1881: HP15_1881 - YcgL domain protein, at 1,985,986 to 1,986,279 _1881 HP15_1882: HP15_1882 - ribonuclease D, at 1,986,276 to 1,987,433 _1882 HP15_1883: HP15_1883 - recombination protein RecR, at 1,987,465 to 1,988,067 _1883 HP15_1884: HP15_1884 - protein belonging to uncharacterized protein family UPF0133, at 1,988,099 to 1,988,422 _1884 HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378 _1885 Position (kb) 1986 1987 1988Strain fitness (log2 ratio) -2 -1 0 1at 1985.717 kb on + strand, within HP15_1880at 1985.725 kb on - strand, within HP15_1880at 1985.762 kb on - strand, within HP15_1880at 1985.779 kb on - strand, within HP15_1880at 1985.789 kb on - strand, within HP15_1880at 1985.853 kb on + strand, within HP15_1880at 1986.000 kb on + strandat 1986.125 kb on + strand, within HP15_1881at 1986.230 kb on - strand, within HP15_1881at 1986.492 kb on - strand, within HP15_1882at 1986.550 kb on + strand, within HP15_1882at 1986.560 kb on + strand, within HP15_1882at 1986.737 kb on - strand, within HP15_1882at 1986.878 kb on + strand, within HP15_1882at 1986.878 kb on + strand, within HP15_1882at 1986.946 kb on + strand, within HP15_1882at 1987.051 kb on + strand, within HP15_1882at 1987.130 kb on + strand, within HP15_1882at 1987.138 kb on - strand, within HP15_1882at 1987.162 kb on - strand, within HP15_1882at 1987.352 kb on - strandat 1987.352 kb on - strandat 1987.606 kb on - strand, within HP15_1883at 1988.098 kb on - strandat 1988.136 kb on - strand, within HP15_1884

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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1,985,717 + HP15_1880 0.39 -0.4
1,985,725 - HP15_1880 0.41 -0.5
1,985,762 - HP15_1880 0.49 -1.0
1,985,779 - HP15_1880 0.53 -0.5
1,985,789 - HP15_1880 0.55 -0.5
1,985,853 + HP15_1880 0.69 +0.3
1,986,000 + +0.2
1,986,125 + HP15_1881 0.47 -0.1
1,986,230 - HP15_1881 0.83 -0.2
1,986,492 - HP15_1882 0.19 -0.2
1,986,550 + HP15_1882 0.24 -2.4
1,986,560 + HP15_1882 0.25 -1.2
1,986,737 - HP15_1882 0.40 -0.6
1,986,878 + HP15_1882 0.52 -0.5
1,986,878 + HP15_1882 0.52 -1.2
1,986,946 + HP15_1882 0.58 -0.8
1,987,051 + HP15_1882 0.67 -0.4
1,987,130 + HP15_1882 0.74 -0.4
1,987,138 - HP15_1882 0.74 -0.9
1,987,162 - HP15_1882 0.77 -0.2
1,987,352 - -0.5
1,987,352 - -0.4
1,987,606 - HP15_1883 0.23 -0.9
1,988,098 - -0.4
1,988,136 - HP15_1884 0.11 -0.9

Or see this region's nucleotide sequence