Strain Fitness in Marinobacter adhaerens HP15 around HP15_1864

Experiment: m.b. Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1863 and HP15_1864 are separated by 123 nucleotidesHP15_1864 and HP15_1865 are separated by 194 nucleotidesHP15_1865 and HP15_1866 are separated by 47 nucleotides HP15_1863: HP15_1863 - RNA helicase, ATP-dependent DEAH box, HrpA type, at 1,965,940 to 1,969,875 _1863 HP15_1864: HP15_1864 - acyl-CoA synthase, at 1,969,999 to 1,971,681 _1864 HP15_1865: HP15_1865 - MaoC domain protein dehydratase, at 1,971,876 to 1,972,361 _1865 HP15_1866: HP15_1866 - conserved hypothetical protein, at 1,972,409 to 1,973,308 _1866 Position (kb) 1969 1970 1971 1972Strain fitness (log2 ratio) -3 -2 -1 0 1at 1969.110 kb on - strand, within HP15_1863at 1969.177 kb on + strand, within HP15_1863at 1969.317 kb on + strand, within HP15_1863at 1969.358 kb on - strand, within HP15_1863at 1969.464 kb on + strand, within HP15_1863at 1969.464 kb on + strand, within HP15_1863at 1969.472 kb on - strand, within HP15_1863at 1969.472 kb on - strand, within HP15_1863at 1969.599 kb on - strandat 1969.645 kb on + strandat 1969.669 kb on + strandat 1969.778 kb on + strandat 1970.062 kb on - strandat 1970.149 kb on + strandat 1970.447 kb on + strand, within HP15_1864at 1970.501 kb on + strand, within HP15_1864at 1970.509 kb on - strand, within HP15_1864at 1970.570 kb on - strand, within HP15_1864at 1970.570 kb on - strand, within HP15_1864at 1970.866 kb on + strand, within HP15_1864at 1970.874 kb on - strand, within HP15_1864at 1970.925 kb on - strand, within HP15_1864at 1970.997 kb on - strand, within HP15_1864at 1971.352 kb on - strand, within HP15_1864at 1971.370 kb on + strand, within HP15_1864at 1971.378 kb on - strand, within HP15_1864at 1971.437 kb on + strand, within HP15_1864at 1971.460 kb on - strand, within HP15_1864at 1971.610 kb on + strandat 1971.824 kb on - strandat 1971.852 kb on + strandat 1971.854 kb on + strandat 1971.880 kb on + strandat 1971.890 kb on + strandat 1971.955 kb on + strand, within HP15_1865at 1971.955 kb on + strand, within HP15_1865at 1971.963 kb on - strand, within HP15_1865at 1971.963 kb on - strand, within HP15_1865at 1971.963 kb on - strand, within HP15_1865at 1971.963 kb on - strand, within HP15_1865at 1971.980 kb on + strand, within HP15_1865at 1972.076 kb on - strand, within HP15_1865at 1972.140 kb on + strand, within HP15_1865at 1972.143 kb on - strand, within HP15_1865at 1972.520 kb on + strand, within HP15_1866at 1972.590 kb on + strand, within HP15_1866

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
remove
1,969,110 - HP15_1863 0.81 +0.2
1,969,177 + HP15_1863 0.82 +1.2
1,969,317 + HP15_1863 0.86 -0.7
1,969,358 - HP15_1863 0.87 +0.8
1,969,464 + HP15_1863 0.90 +0.4
1,969,464 + HP15_1863 0.90 +0.1
1,969,472 - HP15_1863 0.90 -0.5
1,969,472 - HP15_1863 0.90 +0.1
1,969,599 - -0.6
1,969,645 + -1.0
1,969,669 + -0.9
1,969,778 + -0.3
1,970,062 - -1.4
1,970,149 + -3.0
1,970,447 + HP15_1864 0.27 -2.4
1,970,501 + HP15_1864 0.30 -2.4
1,970,509 - HP15_1864 0.30 -1.9
1,970,570 - HP15_1864 0.34 -1.9
1,970,570 - HP15_1864 0.34 -3.1
1,970,866 + HP15_1864 0.52 -0.9
1,970,874 - HP15_1864 0.52 -2.9
1,970,925 - HP15_1864 0.55 -2.5
1,970,997 - HP15_1864 0.59 -2.8
1,971,352 - HP15_1864 0.80 -2.1
1,971,370 + HP15_1864 0.81 -2.4
1,971,378 - HP15_1864 0.82 -2.0
1,971,437 + HP15_1864 0.85 -1.9
1,971,460 - HP15_1864 0.87 -0.4
1,971,610 + -2.1
1,971,824 - -1.4
1,971,852 + +0.8
1,971,854 + -0.4
1,971,880 + +0.2
1,971,890 + -0.6
1,971,955 + HP15_1865 0.16 -0.6
1,971,955 + HP15_1865 0.16 -1.0
1,971,963 - HP15_1865 0.18 +0.5
1,971,963 - HP15_1865 0.18 -0.7
1,971,963 - HP15_1865 0.18 -0.8
1,971,963 - HP15_1865 0.18 +0.2
1,971,980 + HP15_1865 0.21 -0.2
1,972,076 - HP15_1865 0.41 +0.6
1,972,140 + HP15_1865 0.54 +0.1
1,972,143 - HP15_1865 0.55 -0.7
1,972,520 + HP15_1866 0.12 +0.7
1,972,590 + HP15_1866 0.20 -0.8

Or see this region's nucleotide sequence