Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1668 and HP15_1669 are separated by 115 nucleotides HP15_1669 and HP15_1670 are separated by 119 nucleotides HP15_1670 and HP15_1671 are separated by 69 nucleotides
HP15_1668: HP15_1668 - phenazine biosynthesis protein PhzF family, at 1,758,980 to 1,759,876
_1668
HP15_1669: HP15_1669 - transcriptional regulator, LysR family protein, at 1,759,992 to 1,760,879
_1669
HP15_1670: HP15_1670 - conserved hypothetical protein, at 1,760,999 to 1,761,409
_1670
HP15_1671: HP15_1671 - secreted protein, at 1,761,479 to 1,761,598
_1671
Position (kb)
1759
1760
1761 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1758.996 kb on - strand at 1759.001 kb on - strand at 1759.081 kb on - strand, within HP15_1668 at 1759.112 kb on + strand, within HP15_1668 at 1759.120 kb on - strand, within HP15_1668 at 1759.120 kb on - strand, within HP15_1668 at 1759.135 kb on + strand, within HP15_1668 at 1759.143 kb on - strand, within HP15_1668 at 1759.188 kb on - strand, within HP15_1668 at 1759.190 kb on - strand, within HP15_1668 at 1759.230 kb on - strand, within HP15_1668 at 1759.231 kb on - strand, within HP15_1668 at 1759.250 kb on + strand, within HP15_1668 at 1759.300 kb on - strand, within HP15_1668 at 1759.308 kb on + strand, within HP15_1668 at 1759.357 kb on + strand, within HP15_1668 at 1759.424 kb on - strand, within HP15_1668 at 1759.465 kb on + strand, within HP15_1668 at 1759.473 kb on - strand, within HP15_1668 at 1759.475 kb on + strand, within HP15_1668 at 1759.502 kb on + strand at 1759.584 kb on - strand, within HP15_1668 at 1759.714 kb on + strand, within HP15_1668 at 1759.805 kb on - strand at 1759.812 kb on - strand at 1760.009 kb on + strand at 1760.009 kb on + strand at 1760.009 kb on + strand at 1760.017 kb on - strand at 1760.017 kb on - strand at 1760.041 kb on + strand at 1760.104 kb on - strand, within HP15_1669 at 1760.246 kb on + strand, within HP15_1669 at 1760.254 kb on - strand, within HP15_1669 at 1760.258 kb on + strand, within HP15_1669 at 1760.258 kb on + strand, within HP15_1669 at 1760.266 kb on - strand, within HP15_1669 at 1760.444 kb on - strand, within HP15_1669 at 1760.451 kb on + strand, within HP15_1669 at 1760.501 kb on - strand, within HP15_1669 at 1760.574 kb on + strand, within HP15_1669 at 1760.641 kb on + strand, within HP15_1669 at 1760.649 kb on - strand, within HP15_1669 at 1760.708 kb on - strand, within HP15_1669 at 1760.710 kb on + strand, within HP15_1669 at 1760.855 kb on + strand at 1760.863 kb on - strand at 1760.874 kb on + strand at 1760.933 kb on + strand at 1761.045 kb on - strand, within HP15_1670 at 1761.078 kb on - strand, within HP15_1670 at 1761.111 kb on + strand, within HP15_1670 at 1761.112 kb on + strand, within HP15_1670 at 1761.165 kb on + strand, within HP15_1670 at 1761.165 kb on + strand, within HP15_1670 at 1761.175 kb on + strand, within HP15_1670 at 1761.175 kb on + strand, within HP15_1670 at 1761.175 kb on + strand, within HP15_1670 at 1761.175 kb on + strand, within HP15_1670 at 1761.183 kb on - strand, within HP15_1670 at 1761.183 kb on - strand, within HP15_1670 at 1761.183 kb on - strand, within HP15_1670 at 1761.234 kb on + strand, within HP15_1670 at 1761.463 kb on + strand at 1761.642 kb on - strand at 1761.644 kb on - strand at 1761.784 kb on + strand at 1761.784 kb on + strand at 1761.796 kb on + strand at 1761.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 1,758,996 - -0.3 1,759,001 - -1.1 1,759,081 - HP15_1668 0.11 -1.3 1,759,112 + HP15_1668 0.15 -0.1 1,759,120 - HP15_1668 0.16 +0.0 1,759,120 - HP15_1668 0.16 +0.2 1,759,135 + HP15_1668 0.17 -0.8 1,759,143 - HP15_1668 0.18 +0.3 1,759,188 - HP15_1668 0.23 +0.0 1,759,190 - HP15_1668 0.23 -0.0 1,759,230 - HP15_1668 0.28 +0.1 1,759,231 - HP15_1668 0.28 -0.6 1,759,250 + HP15_1668 0.30 +0.2 1,759,300 - HP15_1668 0.36 +0.0 1,759,308 + HP15_1668 0.37 -0.4 1,759,357 + HP15_1668 0.42 -0.0 1,759,424 - HP15_1668 0.49 -0.5 1,759,465 + HP15_1668 0.54 +0.3 1,759,473 - HP15_1668 0.55 +0.3 1,759,475 + HP15_1668 0.55 +0.7 1,759,502 + +1.6 1,759,584 - HP15_1668 0.67 +0.8 1,759,714 + HP15_1668 0.82 -0.6 1,759,805 - -0.3 1,759,812 - -0.5 1,760,009 + -3.0 1,760,009 + +0.2 1,760,009 + +0.4 1,760,017 - -0.5 1,760,017 - -0.6 1,760,041 + -0.5 1,760,104 - HP15_1669 0.13 -0.5 1,760,246 + HP15_1669 0.29 -0.0 1,760,254 - HP15_1669 0.30 +0.2 1,760,258 + HP15_1669 0.30 -0.1 1,760,258 + HP15_1669 0.30 +0.6 1,760,266 - HP15_1669 0.31 -0.8 1,760,444 - HP15_1669 0.51 -0.3 1,760,451 + HP15_1669 0.52 -0.9 1,760,501 - HP15_1669 0.57 +0.2 1,760,574 + HP15_1669 0.66 -1.8 1,760,641 + HP15_1669 0.73 -0.7 1,760,649 - HP15_1669 0.74 -1.1 1,760,708 - HP15_1669 0.81 -0.4 1,760,710 + HP15_1669 0.81 +0.2 1,760,855 + +1.3 1,760,863 - +0.0 1,760,874 + -0.1 1,760,933 + -0.5 1,761,045 - HP15_1670 0.11 -0.3 1,761,078 - HP15_1670 0.19 -0.1 1,761,111 + HP15_1670 0.27 +0.5 1,761,112 + HP15_1670 0.27 +0.1 1,761,165 + HP15_1670 0.40 -0.4 1,761,165 + HP15_1670 0.40 +0.1 1,761,175 + HP15_1670 0.43 -1.0 1,761,175 + HP15_1670 0.43 -0.2 1,761,175 + HP15_1670 0.43 +0.2 1,761,175 + HP15_1670 0.43 -1.6 1,761,183 - HP15_1670 0.45 +1.0 1,761,183 - HP15_1670 0.45 -0.3 1,761,183 - HP15_1670 0.45 +0.2 1,761,234 + HP15_1670 0.57 -0.3 1,761,463 + -0.5 1,761,642 - -0.0 1,761,644 - +0.1 1,761,784 + +0.4 1,761,784 + -0.9 1,761,796 + +0.7 1,761,802 - +0.0
Or see this region's nucleotide sequence