Strain Fitness in Marinobacter adhaerens HP15 around HP15_1635

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1634 and HP15_1635 are separated by 313 nucleotidesHP15_1635 and HP15_1636 are separated by 79 nucleotides HP15_1634: HP15_1634 - branched-chain alpha-keto acid dehydrogenase complex E1 alpha subunit, at 1,733,306 to 1,734,454 _1634 HP15_1635: HP15_1635 - malate:quinone oxidoreductase, at 1,734,768 to 1,736,204 _1635 HP15_1636: HP15_1636 - NADP-dependent isocitrate dehydrogenase-like protein, at 1,736,284 to 1,738,002 _1636 Position (kb) 1734 1735 1736 1737Strain fitness (log2 ratio) -2 -1 0 1at 1733.785 kb on - strand, within HP15_1634at 1733.797 kb on + strand, within HP15_1634at 1733.797 kb on + strand, within HP15_1634at 1733.900 kb on + strand, within HP15_1634at 1733.900 kb on + strand, within HP15_1634at 1733.900 kb on + strand, within HP15_1634at 1733.908 kb on - strand, within HP15_1634at 1733.908 kb on - strand, within HP15_1634at 1733.908 kb on - strand, within HP15_1634at 1733.908 kb on - strand, within HP15_1634at 1734.187 kb on - strand, within HP15_1634at 1734.254 kb on - strand, within HP15_1634at 1734.275 kb on + strand, within HP15_1634at 1734.359 kb on + strandat 1734.389 kb on - strandat 1734.770 kb on - strandat 1734.816 kb on - strandat 1734.882 kb on - strandat 1734.941 kb on + strand, within HP15_1635at 1735.022 kb on + strand, within HP15_1635at 1735.022 kb on + strand, within HP15_1635at 1735.030 kb on - strand, within HP15_1635at 1735.030 kb on - strand, within HP15_1635at 1735.222 kb on + strand, within HP15_1635at 1735.410 kb on + strand, within HP15_1635at 1735.581 kb on + strand, within HP15_1635at 1735.581 kb on + strand, within HP15_1635at 1735.581 kb on + strand, within HP15_1635at 1735.581 kb on + strand, within HP15_1635at 1735.589 kb on - strand, within HP15_1635at 1735.624 kb on - strand, within HP15_1635at 1735.626 kb on + strand, within HP15_1635at 1735.710 kb on - strand, within HP15_1635at 1735.733 kb on - strand, within HP15_1635at 1735.778 kb on - strand, within HP15_1635at 1735.841 kb on - strand, within HP15_1635at 1735.871 kb on - strand, within HP15_1635at 1735.873 kb on + strand, within HP15_1635at 1735.881 kb on - strand, within HP15_1635at 1735.884 kb on + strand, within HP15_1635at 1735.932 kb on + strand, within HP15_1635at 1736.305 kb on - strandat 1736.514 kb on + strand, within HP15_1636at 1736.539 kb on - strand, within HP15_1636at 1736.591 kb on - strand, within HP15_1636at 1736.626 kb on - strand, within HP15_1636at 1736.657 kb on - strand, within HP15_1636at 1736.726 kb on + strand, within HP15_1636at 1736.734 kb on - strand, within HP15_1636at 1736.871 kb on - strand, within HP15_1636at 1736.937 kb on - strand, within HP15_1636at 1737.046 kb on - strand, within HP15_1636at 1737.089 kb on + strand, within HP15_1636at 1737.096 kb on + strand, within HP15_1636at 1737.104 kb on - strand, within HP15_1636at 1737.107 kb on - strand, within HP15_1636at 1737.119 kb on - strand, within HP15_1636at 1737.160 kb on - strand, within HP15_1636

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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1,733,785 - HP15_1634 0.42 -0.9
1,733,797 + HP15_1634 0.43 +0.0
1,733,797 + HP15_1634 0.43 -1.1
1,733,900 + HP15_1634 0.52 -1.5
1,733,900 + HP15_1634 0.52 -0.8
1,733,900 + HP15_1634 0.52 -1.5
1,733,908 - HP15_1634 0.52 -0.9
1,733,908 - HP15_1634 0.52 +0.5
1,733,908 - HP15_1634 0.52 +0.7
1,733,908 - HP15_1634 0.52 -0.4
1,734,187 - HP15_1634 0.77 -0.5
1,734,254 - HP15_1634 0.83 +0.3
1,734,275 + HP15_1634 0.84 +1.0
1,734,359 + -0.2
1,734,389 - -0.5
1,734,770 - +0.2
1,734,816 - -0.3
1,734,882 - -1.6
1,734,941 + HP15_1635 0.12 +1.0
1,735,022 + HP15_1635 0.18 -0.0
1,735,022 + HP15_1635 0.18 -0.0
1,735,030 - HP15_1635 0.18 +0.6
1,735,030 - HP15_1635 0.18 +1.0
1,735,222 + HP15_1635 0.32 +0.1
1,735,410 + HP15_1635 0.45 +0.5
1,735,581 + HP15_1635 0.57 +0.2
1,735,581 + HP15_1635 0.57 +0.8
1,735,581 + HP15_1635 0.57 -0.5
1,735,581 + HP15_1635 0.57 +0.4
1,735,589 - HP15_1635 0.57 -0.4
1,735,624 - HP15_1635 0.60 +0.5
1,735,626 + HP15_1635 0.60 +0.0
1,735,710 - HP15_1635 0.66 -0.0
1,735,733 - HP15_1635 0.67 -0.1
1,735,778 - HP15_1635 0.70 -0.4
1,735,841 - HP15_1635 0.75 +0.8
1,735,871 - HP15_1635 0.77 +0.1
1,735,873 + HP15_1635 0.77 -0.9
1,735,881 - HP15_1635 0.77 -0.6
1,735,884 + HP15_1635 0.78 +0.0
1,735,932 + HP15_1635 0.81 +1.0
1,736,305 - -0.0
1,736,514 + HP15_1636 0.13 +0.5
1,736,539 - HP15_1636 0.15 -0.7
1,736,591 - HP15_1636 0.18 -0.2
1,736,626 - HP15_1636 0.20 +0.4
1,736,657 - HP15_1636 0.22 -0.4
1,736,726 + HP15_1636 0.26 -1.8
1,736,734 - HP15_1636 0.26 -0.7
1,736,871 - HP15_1636 0.34 -0.3
1,736,937 - HP15_1636 0.38 +0.2
1,737,046 - HP15_1636 0.44 +0.2
1,737,089 + HP15_1636 0.47 +0.9
1,737,096 + HP15_1636 0.47 +0.1
1,737,104 - HP15_1636 0.48 +0.1
1,737,107 - HP15_1636 0.48 -0.2
1,737,119 - HP15_1636 0.49 +1.1
1,737,160 - HP15_1636 0.51 -0.3

Or see this region's nucleotide sequence