Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1594 and HP15_1595 overlap by 8 nucleotides HP15_1595 and HP15_1596 are separated by 463 nucleotides
HP15_1594: HP15_1594 - hypothetical protein, at 1,688,652 to 1,690,559
_1594
HP15_1595: HP15_1595 - hypothetical protein, at 1,690,552 to 1,690,821
_1595
HP15_1596: HP15_1596 - D-amino acid dehydrogenase 2 small subunit, at 1,691,285 to 1,692,505
_1596
Position (kb)
1690
1691 Strain fitness (log2 ratio)
-1
0
1
2 at 1689.621 kb on + strand, within HP15_1594 at 1689.815 kb on - strand, within HP15_1594 at 1689.819 kb on + strand, within HP15_1594 at 1689.819 kb on + strand, within HP15_1594 at 1689.889 kb on + strand, within HP15_1594 at 1689.934 kb on + strand, within HP15_1594 at 1689.962 kb on + strand, within HP15_1594 at 1689.962 kb on + strand, within HP15_1594 at 1690.020 kb on + strand, within HP15_1594 at 1690.051 kb on + strand, within HP15_1594 at 1690.063 kb on + strand, within HP15_1594 at 1690.068 kb on + strand, within HP15_1594 at 1690.071 kb on - strand, within HP15_1594 at 1690.071 kb on - strand, within HP15_1594 at 1690.076 kb on - strand, within HP15_1594 at 1690.097 kb on - strand, within HP15_1594 at 1690.104 kb on + strand, within HP15_1594 at 1690.251 kb on - strand, within HP15_1594 at 1690.309 kb on - strand, within HP15_1594 at 1690.389 kb on + strand at 1690.452 kb on - strand at 1690.454 kb on - strand at 1690.523 kb on + strand at 1690.639 kb on + strand, within HP15_1595 at 1690.822 kb on - strand at 1690.903 kb on - strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1690.994 kb on + strand at 1691.002 kb on - strand at 1691.002 kb on - strand at 1691.002 kb on - strand at 1691.099 kb on + strand at 1691.208 kb on + strand at 1691.312 kb on + strand at 1691.333 kb on + strand at 1691.333 kb on + strand at 1691.341 kb on - strand at 1691.355 kb on + strand at 1691.404 kb on - strand at 1691.446 kb on + strand, within HP15_1596 at 1691.478 kb on - strand, within HP15_1596 at 1691.528 kb on - strand, within HP15_1596 at 1691.585 kb on + strand, within HP15_1596 at 1691.593 kb on - strand, within HP15_1596 at 1691.792 kb on - strand, within HP15_1596
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 1,689,621 + HP15_1594 0.51 +0.2 1,689,815 - HP15_1594 0.61 -0.4 1,689,819 + HP15_1594 0.61 -0.4 1,689,819 + HP15_1594 0.61 +0.2 1,689,889 + HP15_1594 0.65 -0.5 1,689,934 + HP15_1594 0.67 +0.1 1,689,962 + HP15_1594 0.69 -1.5 1,689,962 + HP15_1594 0.69 -0.2 1,690,020 + HP15_1594 0.72 +0.1 1,690,051 + HP15_1594 0.73 -0.5 1,690,063 + HP15_1594 0.74 -0.9 1,690,068 + HP15_1594 0.74 -0.1 1,690,071 - HP15_1594 0.74 +0.1 1,690,071 - HP15_1594 0.74 +0.5 1,690,076 - HP15_1594 0.75 +0.1 1,690,097 - HP15_1594 0.76 -0.6 1,690,104 + HP15_1594 0.76 +0.0 1,690,251 - HP15_1594 0.84 -1.2 1,690,309 - HP15_1594 0.87 +0.3 1,690,389 + +0.2 1,690,452 - -0.4 1,690,454 - +1.0 1,690,523 + +0.1 1,690,639 + HP15_1595 0.32 +2.6 1,690,822 - -0.6 1,690,903 - +0.5 1,690,994 + +0.5 1,690,994 + +1.1 1,690,994 + -0.2 1,690,994 + +0.6 1,691,002 - +0.5 1,691,002 - +1.2 1,691,002 - +1.1 1,691,099 + -0.3 1,691,208 + -0.5 1,691,312 + +0.5 1,691,333 + -0.1 1,691,333 + +0.8 1,691,341 - +0.4 1,691,355 + +0.5 1,691,404 - +0.0 1,691,446 + HP15_1596 0.13 +0.9 1,691,478 - HP15_1596 0.16 +0.8 1,691,528 - HP15_1596 0.20 +0.4 1,691,585 + HP15_1596 0.25 +0.6 1,691,593 - HP15_1596 0.25 +0.4 1,691,792 - HP15_1596 0.42 +0.9
Or see this region's nucleotide sequence