Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1531 and HP15_1532 are separated by 284 nucleotides HP15_1532 and HP15_1533 are separated by 1 nucleotides HP15_1533 and HP15_1534 are separated by 122 nucleotides
HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520
_1531
HP15_1532: HP15_1532 - transcriptional regulator, GntR family, at 1,613,805 to 1,614,488
_1532
HP15_1533: HP15_1533 - chromosome segregation protein SMC, at 1,614,490 to 1,617,984
_1533
HP15_1534: HP15_1534 - cell division protein ZipA-like protein, at 1,618,107 to 1,619,120
_1534
Position (kb)
1614
1615
1616
1617
1618 Strain fitness (log2 ratio)
-2
-1
0
1 at 1613.707 kb on - strand at 1613.707 kb on - strand at 1613.717 kb on - strand at 1614.407 kb on + strand, within HP15_1532 at 1614.547 kb on + strand at 1614.644 kb on + strand at 1614.698 kb on + strand at 1614.860 kb on - strand, within HP15_1533 at 1614.935 kb on - strand, within HP15_1533 at 1615.613 kb on - strand, within HP15_1533 at 1615.682 kb on - strand, within HP15_1533 at 1615.963 kb on - strand, within HP15_1533 at 1616.006 kb on - strand, within HP15_1533 at 1616.357 kb on + strand, within HP15_1533 at 1616.365 kb on - strand, within HP15_1533 at 1616.489 kb on + strand, within HP15_1533 at 1616.661 kb on - strand, within HP15_1533 at 1616.919 kb on - strand, within HP15_1533 at 1616.930 kb on + strand, within HP15_1533 at 1617.258 kb on + strand, within HP15_1533 at 1617.408 kb on + strand, within HP15_1533 at 1617.465 kb on + strand, within HP15_1533 at 1617.540 kb on + strand, within HP15_1533 at 1617.548 kb on - strand, within HP15_1533 at 1617.604 kb on - strand, within HP15_1533 at 1617.674 kb on - strand at 1617.797 kb on - strand at 1617.978 kb on + strand at 1617.987 kb on - strand at 1618.839 kb on + strand, within HP15_1534 at 1618.893 kb on + strand, within HP15_1534
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 1,613,707 - -0.8 1,613,707 - -0.7 1,613,717 - -2.1 1,614,407 + HP15_1532 0.88 -1.5 1,614,547 + -0.9 1,614,644 + -1.1 1,614,698 + -0.6 1,614,860 - HP15_1533 0.11 -1.1 1,614,935 - HP15_1533 0.13 -0.5 1,615,613 - HP15_1533 0.32 -0.8 1,615,682 - HP15_1533 0.34 -1.0 1,615,963 - HP15_1533 0.42 -1.2 1,616,006 - HP15_1533 0.43 -1.4 1,616,357 + HP15_1533 0.53 -0.1 1,616,365 - HP15_1533 0.54 -1.2 1,616,489 + HP15_1533 0.57 -0.6 1,616,661 - HP15_1533 0.62 -2.5 1,616,919 - HP15_1533 0.69 -0.5 1,616,930 + HP15_1533 0.70 -0.6 1,617,258 + HP15_1533 0.79 -0.6 1,617,408 + HP15_1533 0.83 -0.4 1,617,465 + HP15_1533 0.85 -0.2 1,617,540 + HP15_1533 0.87 -0.4 1,617,548 - HP15_1533 0.87 -2.3 1,617,604 - HP15_1533 0.89 -0.8 1,617,674 - -1.1 1,617,797 - -2.2 1,617,978 + +1.0 1,617,987 - +1.6 1,618,839 + HP15_1534 0.72 -1.2 1,618,893 + HP15_1534 0.78 -2.2
Or see this region's nucleotide sequence