Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1217 and HP15_1218 are separated by 11 nucleotides HP15_1218 and HP15_1219 are separated by 6 nucleotides HP15_1219 and HP15_1220 are separated by 208 nucleotides
HP15_1217: HP15_1217 - hypothetical protein, at 1,266,501 to 1,266,674
_1217
HP15_1218: HP15_1218 - OmpA/MotB domain protein, at 1,266,686 to 1,267,603
_1218
HP15_1219: HP15_1219 - histone deacetylase/AcuC/AphA family protein, at 1,267,610 to 1,268,536
_1219
HP15_1220: HP15_1220 - acetyltransferase, GNAT family, at 1,268,745 to 1,271,489
_1220
Position (kb)
1267
1268
1269 Strain fitness (log2 ratio)
-2
-1
0
1 at 1266.717 kb on - strand at 1266.717 kb on - strand at 1266.802 kb on + strand, within HP15_1218 at 1266.869 kb on + strand, within HP15_1218 at 1266.994 kb on - strand, within HP15_1218 at 1267.112 kb on - strand, within HP15_1218 at 1267.137 kb on + strand, within HP15_1218 at 1267.241 kb on - strand, within HP15_1218 at 1267.246 kb on - strand, within HP15_1218 at 1267.246 kb on - strand, within HP15_1218 at 1267.297 kb on - strand, within HP15_1218 at 1267.302 kb on - strand, within HP15_1218 at 1267.436 kb on - strand, within HP15_1218 at 1267.637 kb on - strand at 1267.641 kb on + strand at 1267.685 kb on - strand at 1267.948 kb on + strand, within HP15_1219 at 1267.989 kb on - strand, within HP15_1219 at 1267.991 kb on + strand, within HP15_1219 at 1267.999 kb on - strand, within HP15_1219 at 1268.183 kb on + strand, within HP15_1219 at 1268.461 kb on + strand at 1268.469 kb on - strand at 1268.531 kb on + strand at 1268.771 kb on + strand at 1268.793 kb on - strand at 1268.829 kb on - strand at 1268.957 kb on + strand at 1269.087 kb on + strand, within HP15_1220 at 1269.122 kb on - strand, within HP15_1220 at 1269.197 kb on - strand, within HP15_1220 at 1269.280 kb on + strand, within HP15_1220 at 1269.355 kb on + strand, within HP15_1220 at 1269.369 kb on + strand, within HP15_1220 at 1269.369 kb on + strand, within HP15_1220 at 1269.372 kb on - strand, within HP15_1220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 1,266,717 - -0.1 1,266,717 - -0.4 1,266,802 + HP15_1218 0.13 -0.1 1,266,869 + HP15_1218 0.20 +0.1 1,266,994 - HP15_1218 0.34 -0.6 1,267,112 - HP15_1218 0.46 -0.1 1,267,137 + HP15_1218 0.49 -1.0 1,267,241 - HP15_1218 0.60 -0.5 1,267,246 - HP15_1218 0.61 -0.8 1,267,246 - HP15_1218 0.61 -0.8 1,267,297 - HP15_1218 0.67 -0.6 1,267,302 - HP15_1218 0.67 -0.6 1,267,436 - HP15_1218 0.82 -0.8 1,267,637 - +0.5 1,267,641 + +0.1 1,267,685 - -1.0 1,267,948 + HP15_1219 0.36 -1.8 1,267,989 - HP15_1219 0.41 -0.7 1,267,991 + HP15_1219 0.41 -1.2 1,267,999 - HP15_1219 0.42 +0.0 1,268,183 + HP15_1219 0.62 -1.0 1,268,461 + -1.5 1,268,469 - +0.4 1,268,531 + -0.6 1,268,771 + +0.3 1,268,793 - -0.8 1,268,829 - +0.4 1,268,957 + -0.2 1,269,087 + HP15_1220 0.12 +1.3 1,269,122 - HP15_1220 0.14 +0.6 1,269,197 - HP15_1220 0.16 +0.3 1,269,280 + HP15_1220 0.19 +0.7 1,269,355 + HP15_1220 0.22 +0.5 1,269,369 + HP15_1220 0.23 +0.2 1,269,369 + HP15_1220 0.23 -0.2 1,269,372 - HP15_1220 0.23 +0.1
Or see this region's nucleotide sequence