Strain Fitness in Marinobacter adhaerens HP15 around HP15_101

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_100 and HP15_101 are separated by 43 nucleotidesHP15_101 and HP15_102 are separated by 248 nucleotides HP15_100: HP15_100 - saccharopine dehydrogenase, at 102,084 to 103,295 _100 HP15_101: HP15_101 - outer membrane porin, at 103,339 to 104,310 _101 HP15_102: HP15_102 - conserved hypothetical protein, secreted, at 104,559 to 105,965 _102 Position (kb) 103 104 105Strain fitness (log2 ratio) -2 -1 0 1 2 3at 102.340 kb on + strand, within HP15_100at 102.340 kb on + strand, within HP15_100at 102.348 kb on - strand, within HP15_100at 102.368 kb on - strand, within HP15_100at 102.418 kb on + strand, within HP15_100at 102.418 kb on + strand, within HP15_100at 102.426 kb on - strand, within HP15_100at 102.426 kb on - strand, within HP15_100at 102.441 kb on - strand, within HP15_100at 102.441 kb on - strand, within HP15_100at 102.515 kb on - strand, within HP15_100at 102.515 kb on - strand, within HP15_100at 102.540 kb on - strand, within HP15_100at 102.563 kb on + strand, within HP15_100at 102.573 kb on + strand, within HP15_100at 102.629 kb on + strand, within HP15_100at 102.662 kb on + strand, within HP15_100at 102.670 kb on - strand, within HP15_100at 102.765 kb on + strand, within HP15_100at 102.773 kb on - strand, within HP15_100at 102.799 kb on + strand, within HP15_100at 102.827 kb on - strand, within HP15_100at 102.946 kb on + strand, within HP15_100at 102.975 kb on - strand, within HP15_100at 103.034 kb on - strand, within HP15_100at 103.169 kb on + strand, within HP15_100at 103.177 kb on - strandat 103.304 kb on + strandat 103.314 kb on + strandat 103.317 kb on - strandat 103.317 kb on - strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.465 kb on + strand, within HP15_101at 103.465 kb on + strand, within HP15_101at 103.465 kb on + strand, within HP15_101at 103.473 kb on - strand, within HP15_101at 103.473 kb on - strand, within HP15_101at 103.498 kb on - strand, within HP15_101at 103.539 kb on - strand, within HP15_101at 103.582 kb on + strand, within HP15_101at 103.589 kb on + strand, within HP15_101at 103.589 kb on + strand, within HP15_101at 103.597 kb on - strand, within HP15_101at 103.599 kb on + strand, within HP15_101at 103.607 kb on - strand, within HP15_101at 103.624 kb on - strand, within HP15_101at 103.632 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.696 kb on - strand, within HP15_101at 103.698 kb on + strand, within HP15_101at 103.762 kb on + strand, within HP15_101at 103.762 kb on + strand, within HP15_101at 103.767 kb on + strand, within HP15_101at 103.767 kb on + strand, within HP15_101at 103.770 kb on - strand, within HP15_101at 103.780 kb on + strand, within HP15_101at 103.823 kb on - strand, within HP15_101at 103.999 kb on - strand, within HP15_101at 103.999 kb on - strand, within HP15_101at 104.032 kb on + strand, within HP15_101at 104.047 kb on + strand, within HP15_101at 104.118 kb on + strand, within HP15_101at 104.123 kb on + strand, within HP15_101at 104.164 kb on + strand, within HP15_101at 104.179 kb on + strand, within HP15_101at 104.187 kb on - strand, within HP15_101at 104.217 kb on + strandat 104.217 kb on + strandat 104.225 kb on - strandat 104.251 kb on - strandat 104.266 kb on - strandat 104.266 kb on - strandat 104.266 kb on - strandat 104.285 kb on + strandat 104.376 kb on + strandat 104.384 kb on - strandat 104.571 kb on + strandat 104.594 kb on + strandat 104.604 kb on - strandat 104.614 kb on - strandat 104.657 kb on - strandat 104.660 kb on - strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.815 kb on - strand, within HP15_102at 104.839 kb on - strand, within HP15_102at 104.839 kb on - strand, within HP15_102at 104.855 kb on + strand, within HP15_102at 104.863 kb on - strand, within HP15_102at 104.875 kb on - strand, within HP15_102at 104.883 kb on + strand, within HP15_102at 104.891 kb on + strand, within HP15_102at 104.891 kb on + strand, within HP15_102at 104.901 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.943 kb on - strand, within HP15_102at 104.943 kb on - strand, within HP15_102at 105.015 kb on + strand, within HP15_102at 105.033 kb on - strand, within HP15_102at 105.053 kb on + strand, within HP15_102at 105.076 kb on + strand, within HP15_102at 105.097 kb on + strand, within HP15_102at 105.097 kb on + strand, within HP15_102at 105.102 kb on + strand, within HP15_102at 105.105 kb on - strand, within HP15_102at 105.105 kb on - strand, within HP15_102at 105.149 kb on + strand, within HP15_102at 105.154 kb on + strand, within HP15_102at 105.157 kb on - strand, within HP15_102at 105.163 kb on + strand, within HP15_102at 105.193 kb on - strand, within HP15_102at 105.242 kb on - strand, within HP15_102

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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102,340 + HP15_100 0.21 -0.0
102,340 + HP15_100 0.21 +0.3
102,348 - HP15_100 0.22 -0.7
102,368 - HP15_100 0.23 -0.5
102,418 + HP15_100 0.28 +0.2
102,418 + HP15_100 0.28 -1.3
102,426 - HP15_100 0.28 -0.2
102,426 - HP15_100 0.28 -0.2
102,441 - HP15_100 0.29 +0.0
102,441 - HP15_100 0.29 -0.9
102,515 - HP15_100 0.36 +0.1
102,515 - HP15_100 0.36 +1.4
102,540 - HP15_100 0.38 +0.6
102,563 + HP15_100 0.40 +0.8
102,573 + HP15_100 0.40 -0.7
102,629 + HP15_100 0.45 +0.1
102,662 + HP15_100 0.48 +0.2
102,670 - HP15_100 0.48 -0.3
102,765 + HP15_100 0.56 -0.2
102,773 - HP15_100 0.57 -0.3
102,799 + HP15_100 0.59 +0.2
102,827 - HP15_100 0.61 -0.8
102,946 + HP15_100 0.71 -0.2
102,975 - HP15_100 0.74 -1.0
103,034 - HP15_100 0.78 -1.9
103,169 + HP15_100 0.90 +0.3
103,177 - -0.0
103,304 + -1.8
103,314 + +0.6
103,317 - -0.3
103,317 - +0.1
103,394 + +0.8
103,394 + +0.5
103,394 + -1.8
103,394 + +0.0
103,394 + +0.6
103,394 + -0.9
103,394 + +0.1
103,394 + +0.3
103,394 + +0.1
103,394 + -0.3
103,394 + -0.7
103,394 + -0.9
103,394 + +0.1
103,394 + +0.4
103,394 + +0.6
103,394 + -0.6
103,394 + -1.1
103,394 + -0.0
103,394 + -0.6
103,394 + -0.4
103,394 + +0.0
103,394 + +0.5
103,402 - +0.0
103,402 - +0.1
103,402 - +0.5
103,402 - -0.6
103,402 - +0.8
103,402 - +0.0
103,402 - -0.4
103,402 - +0.4
103,402 - +0.4
103,402 - -0.2
103,402 - +0.1
103,402 - -0.5
103,402 - +0.1
103,402 - +0.2
103,465 + HP15_101 0.13 -0.9
103,465 + HP15_101 0.13 +0.3
103,465 + HP15_101 0.13 -0.7
103,473 - HP15_101 0.14 -0.1
103,473 - HP15_101 0.14 -0.3
103,498 - HP15_101 0.16 +1.1
103,539 - HP15_101 0.21 +0.2
103,582 + HP15_101 0.25 -1.1
103,589 + HP15_101 0.26 -1.0
103,589 + HP15_101 0.26 +0.7
103,597 - HP15_101 0.27 -1.4
103,599 + HP15_101 0.27 +0.1
103,607 - HP15_101 0.28 +0.3
103,624 - HP15_101 0.29 -0.0
103,632 + HP15_101 0.30 -0.1
103,666 + HP15_101 0.34 +0.2
103,666 + HP15_101 0.34 -0.0
103,666 + HP15_101 0.34 +0.2
103,666 + HP15_101 0.34 -0.0
103,666 + HP15_101 0.34 -0.4
103,674 - HP15_101 0.34 -0.0
103,674 - HP15_101 0.34 +0.2
103,674 - HP15_101 0.34 +0.1
103,674 - HP15_101 0.34 +0.3
103,683 + HP15_101 0.35 +0.1
103,683 + HP15_101 0.35 +0.4
103,683 + HP15_101 0.35 -0.3
103,683 + HP15_101 0.35 -0.4
103,683 + HP15_101 0.35 -1.1
103,683 + HP15_101 0.35 -2.4
103,683 + HP15_101 0.35 -1.3
103,683 + HP15_101 0.35 +0.2
103,683 + HP15_101 0.35 -0.9
103,683 + HP15_101 0.35 -0.6
103,683 + HP15_101 0.35 -1.0
103,683 + HP15_101 0.35 -0.4
103,691 - HP15_101 0.36 -1.3
103,691 - HP15_101 0.36 -0.8
103,691 - HP15_101 0.36 +0.7
103,691 - HP15_101 0.36 -0.4
103,691 - HP15_101 0.36 +0.0
103,696 - HP15_101 0.37 +0.5
103,698 + HP15_101 0.37 +0.1
103,762 + HP15_101 0.44 +0.1
103,762 + HP15_101 0.44 +0.1
103,767 + HP15_101 0.44 +0.2
103,767 + HP15_101 0.44 -1.7
103,770 - HP15_101 0.44 +0.9
103,780 + HP15_101 0.45 +0.2
103,823 - HP15_101 0.50 -1.0
103,999 - HP15_101 0.68 -0.0
103,999 - HP15_101 0.68 +0.5
104,032 + HP15_101 0.71 +0.9
104,047 + HP15_101 0.73 -0.0
104,118 + HP15_101 0.80 +1.5
104,123 + HP15_101 0.81 -0.3
104,164 + HP15_101 0.85 +0.1
104,179 + HP15_101 0.86 +3.5
104,187 - HP15_101 0.87 -0.9
104,217 + -0.4
104,217 + +0.5
104,225 - -0.9
104,251 - +0.5
104,266 - +0.2
104,266 - +0.0
104,266 - -0.3
104,285 + -1.1
104,376 + -1.0
104,384 - -0.7
104,571 + -0.7
104,594 + +0.6
104,604 - -0.9
104,614 - +0.6
104,657 - -0.2
104,660 - +0.8
104,672 + +0.1
104,672 + +0.2
104,672 + -0.5
104,672 + -0.7
104,680 - +0.3
104,680 - -0.2
104,680 - +0.3
104,680 - -0.0
104,815 - HP15_102 0.18 -0.4
104,839 - HP15_102 0.20 -0.2
104,839 - HP15_102 0.20 +0.5
104,855 + HP15_102 0.21 -2.0
104,863 - HP15_102 0.22 +0.1
104,875 - HP15_102 0.22 -0.9
104,883 + HP15_102 0.23 -1.0
104,891 + HP15_102 0.24 -0.7
104,891 + HP15_102 0.24 +1.4
104,901 + HP15_102 0.24 -0.4
104,935 + HP15_102 0.27 +0.2
104,935 + HP15_102 0.27 -1.0
104,935 + HP15_102 0.27 +0.4
104,935 + HP15_102 0.27 -1.4
104,935 + HP15_102 0.27 +0.6
104,943 - HP15_102 0.27 +0.5
104,943 - HP15_102 0.27 +0.2
105,015 + HP15_102 0.32 -1.2
105,033 - HP15_102 0.34 -0.3
105,053 + HP15_102 0.35 -0.4
105,076 + HP15_102 0.37 +0.4
105,097 + HP15_102 0.38 +0.9
105,097 + HP15_102 0.38 +0.5
105,102 + HP15_102 0.39 +1.1
105,105 - HP15_102 0.39 +0.5
105,105 - HP15_102 0.39 -0.2
105,149 + HP15_102 0.42 -2.0
105,154 + HP15_102 0.42 -0.4
105,157 - HP15_102 0.43 -0.0
105,163 + HP15_102 0.43 +0.4
105,193 - HP15_102 0.45 +0.1
105,242 - HP15_102 0.49 -0.3

Or see this region's nucleotide sequence