Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2307 and DvMF_2308 are separated by 407 nucleotides DvMF_2308 and DvMF_2309 are separated by 75 nucleotides DvMF_2309 and DvMF_2310 are separated by 186 nucleotides
DvMF_2307: DvMF_2307 - amidophosphoribosyltransferase (RefSeq), at 2,900,037 to 2,901,440
_2307
DvMF_2308: DvMF_2308 - KpsF/GutQ family protein (RefSeq), at 2,901,848 to 2,902,849
_2308
DvMF_2309: DvMF_2309 - thioesterase superfamily protein (RefSeq), at 2,902,925 to 2,903,452
_2309
DvMF_2310: DvMF_2310 - hypothetical protein (RefSeq), at 2,903,639 to 2,904,985
_2310
Position (kb)
2901
2902
2903 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2900.957 kb on + strand, within DvMF_2307 at 2900.957 kb on - strand, within DvMF_2307 at 2901.041 kb on + strand, within DvMF_2307 at 2901.049 kb on - strand, within DvMF_2307 at 2901.605 kb on - strand at 2901.672 kb on - strand at 2901.714 kb on - strand at 2901.714 kb on - strand at 2901.714 kb on - strand at 2903.155 kb on - strand, within DvMF_2309 at 2903.156 kb on + strand, within DvMF_2309 at 2903.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 2,900,957 + DvMF_2307 0.66 -5.0 2,900,957 - DvMF_2307 0.66 -3.2 2,901,041 + DvMF_2307 0.72 -5.6 2,901,049 - DvMF_2307 0.72 -2.4 2,901,605 - -0.5 2,901,672 - +0.5 2,901,714 - -0.1 2,901,714 - -0.5 2,901,714 - -0.2 2,903,155 - DvMF_2309 0.44 -0.1 2,903,156 + DvMF_2309 0.44 +0.0 2,903,720 - -0.8
Or see this region's nucleotide sequence