Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0370

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0369 and DvMF_0370 are separated by 303 nucleotidesDvMF_0370 and DvMF_0371 are separated by 334 nucleotides DvMF_0369: DvMF_0369 - pseudouridine synthase (RefSeq), at 434,506 to 435,261 _0369 DvMF_0370: DvMF_0370 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 435,565 to 436,266 _0370 DvMF_0371: DvMF_0371 - cell divisionFtsK/SpoIIIE (RefSeq), at 436,601 to 439,333 _0371 Position (kb) 435 436 437Strain fitness (log2 ratio) -1 0 1at 434.589 kb on + strand, within DvMF_0369at 434.590 kb on - strand, within DvMF_0369at 434.635 kb on - strand, within DvMF_0369at 434.635 kb on - strand, within DvMF_0369at 434.642 kb on + strand, within DvMF_0369at 434.790 kb on - strand, within DvMF_0369at 434.790 kb on - strand, within DvMF_0369at 434.828 kb on - strand, within DvMF_0369at 434.911 kb on + strand, within DvMF_0369at 434.944 kb on + strand, within DvMF_0369at 434.944 kb on - strand, within DvMF_0369at 434.989 kb on + strand, within DvMF_0369at 434.998 kb on - strand, within DvMF_0369at 435.186 kb on + strandat 435.229 kb on + strandat 435.237 kb on - strandat 435.332 kb on - strandat 435.496 kb on + strandat 436.305 kb on + strandat 436.419 kb on + strandat 436.419 kb on + strandat 436.427 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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434,589 + DvMF_0369 0.11 -0.4
434,590 - DvMF_0369 0.11 -0.2
434,635 - DvMF_0369 0.17 -0.9
434,635 - DvMF_0369 0.17 +0.1
434,642 + DvMF_0369 0.18 -1.3
434,790 - DvMF_0369 0.38 -0.5
434,790 - DvMF_0369 0.38 -0.0
434,828 - DvMF_0369 0.43 +1.4
434,911 + DvMF_0369 0.54 -0.3
434,944 + DvMF_0369 0.58 -0.1
434,944 - DvMF_0369 0.58 +0.3
434,989 + DvMF_0369 0.64 -0.1
434,998 - DvMF_0369 0.65 +0.4
435,186 + +0.1
435,229 + -0.8
435,237 - -0.3
435,332 - -0.2
435,496 + -0.4
436,305 + -0.4
436,419 + -0.3
436,419 + -0.4
436,427 - -0.7

Or see this region's nucleotide sequence