Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1182

Experiment: MoLS4 with L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1181 and DVU1182 are separated by 48 nucleotidesDVU1182 and DVU1183 overlap by 19 nucleotides DVU1181: DVU1181 - response regulator (TIGR), at 1,271,372 to 1,272,442 DVU1181 DVU1182: DVU1182 - hypothetical protein (TIGR), at 1,272,491 to 1,273,405 DVU1182 DVU1183: DVU1183 - HD domain protein (TIGR), at 1,273,387 to 1,274,634 DVU1183 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -2 -1 0 1 2at 1271.493 kb on + strand, within DVU1181at 1271.493 kb on + strand, within DVU1181at 1271.501 kb on - strand, within DVU1181at 1271.522 kb on - strand, within DVU1181at 1271.527 kb on + strand, within DVU1181at 1271.541 kb on + strand, within DVU1181at 1271.549 kb on - strand, within DVU1181at 1271.830 kb on + strand, within DVU1181at 1271.912 kb on - strand, within DVU1181at 1271.919 kb on + strand, within DVU1181at 1271.921 kb on - strand, within DVU1181at 1271.959 kb on - strand, within DVU1181at 1272.019 kb on + strand, within DVU1181at 1272.019 kb on + strand, within DVU1181at 1272.027 kb on - strand, within DVU1181at 1272.139 kb on - strand, within DVU1181at 1272.141 kb on - strand, within DVU1181at 1272.211 kb on + strand, within DVU1181at 1272.211 kb on + strand, within DVU1181at 1272.219 kb on - strand, within DVU1181at 1272.221 kb on + strand, within DVU1181at 1272.303 kb on + strand, within DVU1181at 1272.315 kb on + strand, within DVU1181at 1272.317 kb on + strand, within DVU1181at 1272.351 kb on + strandat 1272.377 kb on - strandat 1272.493 kb on + strandat 1272.537 kb on - strandat 1272.537 kb on - strandat 1272.675 kb on - strand, within DVU1182at 1272.688 kb on + strand, within DVU1182at 1272.703 kb on + strand, within DVU1182at 1272.711 kb on - strand, within DVU1182at 1272.711 kb on - strand, within DVU1182at 1272.711 kb on - strand, within DVU1182at 1272.711 kb on - strand, within DVU1182at 1272.724 kb on - strand, within DVU1182at 1272.803 kb on + strand, within DVU1182at 1272.810 kb on + strand, within DVU1182at 1272.810 kb on + strand, within DVU1182at 1272.811 kb on - strand, within DVU1182at 1272.901 kb on - strand, within DVU1182at 1272.968 kb on - strand, within DVU1182at 1272.995 kb on - strand, within DVU1182at 1273.257 kb on + strand, within DVU1182at 1273.265 kb on - strand, within DVU1182at 1273.319 kb on + strandat 1273.365 kb on - strandat 1273.413 kb on - strandat 1273.414 kb on + strandat 1273.450 kb on + strandat 1273.458 kb on - strandat 1273.599 kb on - strand, within DVU1183at 1273.608 kb on - strand, within DVU1183at 1273.761 kb on + strand, within DVU1183at 1273.845 kb on - strand, within DVU1183at 1273.869 kb on - strand, within DVU1183at 1273.938 kb on + strand, within DVU1183at 1273.956 kb on - strand, within DVU1183at 1273.973 kb on + strand, within DVU1183at 1274.045 kb on - strand, within DVU1183at 1274.065 kb on + strand, within DVU1183at 1274.073 kb on - strand, within DVU1183at 1274.163 kb on - strand, within DVU1183at 1274.165 kb on + strand, within DVU1183at 1274.173 kb on - strand, within DVU1183at 1274.205 kb on + strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.223 kb on - strand, within DVU1183at 1274.256 kb on - strand, within DVU1183at 1274.404 kb on + strand, within DVU1183

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N)
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1,271,493 + DVU1181 0.11 -0.6
1,271,493 + DVU1181 0.11 +0.5
1,271,501 - DVU1181 0.12 -0.6
1,271,522 - DVU1181 0.14 -0.2
1,271,527 + DVU1181 0.14 -0.6
1,271,541 + DVU1181 0.16 -1.4
1,271,549 - DVU1181 0.17 -0.1
1,271,830 + DVU1181 0.43 -0.3
1,271,912 - DVU1181 0.50 -0.8
1,271,919 + DVU1181 0.51 -1.0
1,271,921 - DVU1181 0.51 -0.9
1,271,959 - DVU1181 0.55 -0.8
1,272,019 + DVU1181 0.60 -1.1
1,272,019 + DVU1181 0.60 -0.2
1,272,027 - DVU1181 0.61 -0.6
1,272,139 - DVU1181 0.72 -0.1
1,272,141 - DVU1181 0.72 +0.0
1,272,211 + DVU1181 0.78 -0.2
1,272,211 + DVU1181 0.78 -0.4
1,272,219 - DVU1181 0.79 -1.5
1,272,221 + DVU1181 0.79 -0.8
1,272,303 + DVU1181 0.87 +0.1
1,272,315 + DVU1181 0.88 -0.5
1,272,317 + DVU1181 0.88 -1.6
1,272,351 + -0.4
1,272,377 - -0.6
1,272,493 + -0.3
1,272,537 - +0.6
1,272,537 - -0.5
1,272,675 - DVU1182 0.20 -0.9
1,272,688 + DVU1182 0.22 -0.4
1,272,703 + DVU1182 0.23 -0.6
1,272,711 - DVU1182 0.24 -1.1
1,272,711 - DVU1182 0.24 -2.6
1,272,711 - DVU1182 0.24 -0.2
1,272,711 - DVU1182 0.24 -1.2
1,272,724 - DVU1182 0.25 -0.2
1,272,803 + DVU1182 0.34 -0.8
1,272,810 + DVU1182 0.35 -1.8
1,272,810 + DVU1182 0.35 -0.3
1,272,811 - DVU1182 0.35 -0.1
1,272,901 - DVU1182 0.45 +0.1
1,272,968 - DVU1182 0.52 -0.7
1,272,995 - DVU1182 0.55 -0.2
1,273,257 + DVU1182 0.84 +1.7
1,273,265 - DVU1182 0.85 +1.5
1,273,319 + +0.4
1,273,365 - +0.0
1,273,413 - -0.2
1,273,414 + +0.1
1,273,450 + +0.4
1,273,458 - -1.8
1,273,599 - DVU1183 0.17 -0.6
1,273,608 - DVU1183 0.18 +0.1
1,273,761 + DVU1183 0.30 -1.0
1,273,845 - DVU1183 0.37 +0.0
1,273,869 - DVU1183 0.39 -1.1
1,273,938 + DVU1183 0.44 +0.3
1,273,956 - DVU1183 0.46 +0.5
1,273,973 + DVU1183 0.47 +0.3
1,274,045 - DVU1183 0.53 +0.6
1,274,065 + DVU1183 0.54 -0.1
1,274,073 - DVU1183 0.55 +0.8
1,274,163 - DVU1183 0.62 +0.1
1,274,165 + DVU1183 0.62 -0.2
1,274,173 - DVU1183 0.63 +0.2
1,274,205 + DVU1183 0.66 -0.2
1,274,213 - DVU1183 0.66 -0.2
1,274,213 - DVU1183 0.66 +1.9
1,274,213 - DVU1183 0.66 +0.2
1,274,223 - DVU1183 0.67 -0.2
1,274,256 - DVU1183 0.70 +0.1
1,274,404 + DVU1183 0.81 -0.1

Or see this region's nucleotide sequence