Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22335

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
5,022,186	+		PFLU_RS22320	0.88	-0.4
5,022,187	-		PFLU_RS22320	0.88	+0.0
5,022,187	-		PFLU_RS22320	0.88	+0.0
5,022,187	-		PFLU_RS22320	0.88	-1.8
5,022,187	-		PFLU_RS22320	0.88	-1.4
5,022,187	-		PFLU_RS22320	0.88	+0.6
5,022,187	-		PFLU_RS22320	0.88	-0.7
5,022,187	-		PFLU_RS22320	0.88	+1.2
5,022,282	+				+1.6
5,022,282	+				-0.4
5,022,282	+				+0.6
5,022,282	+				-1.0
5,022,282	+				+1.6
5,022,282	+				+0.6
5,022,282	+				+1.0
5,022,282	+				+2.9
5,022,282	+				+1.6
5,022,282	+				-1.0
5,022,282	+				+1.6
5,022,283	-				-0.2
5,022,283	-				+0.9
5,022,283	-				-1.4
5,022,283	-				+0.0
5,022,283	-				+1.6
5,022,283	-				+0.0
5,022,283	-				+0.4
5,022,283	-				-0.2
5,022,332	+				+2.8
5,022,333	-				+1.0
5,022,333	-				+0.0
5,022,502	+		PFLU_RS22325	0.23	+1.6
5,022,502	+		PFLU_RS22325	0.23	+0.6
5,022,503	-		PFLU_RS22325	0.23	+0.0
5,022,535	+		PFLU_RS22325	0.29	-0.7
5,022,535	+		PFLU_RS22325	0.29	-1.2
5,022,535	+		PFLU_RS22325	0.29	-1.4
5,022,535	+		PFLU_RS22325	0.29	+0.6
5,022,535	+		PFLU_RS22325	0.29	-1.0
5,022,535	+		PFLU_RS22325	0.29	+0.0
5,022,535	+		PFLU_RS22325	0.29	+0.6
5,022,535	+		PFLU_RS22325	0.29	-0.8
5,022,535	+		PFLU_RS22325	0.29	+0.6
5,022,535	+		PFLU_RS22325	0.29	-1.6
5,022,535	+		PFLU_RS22325	0.29	-0.7
5,022,535	+		PFLU_RS22325	0.29	+0.6
5,022,535	+		PFLU_RS22325	0.29	-3.3
5,022,535	+		PFLU_RS22325	0.29	+2.2
5,022,535	+		PFLU_RS22325	0.29	+0.0
5,022,536	-		PFLU_RS22325	0.29	+1.6
5,022,536	-		PFLU_RS22325	0.29	-0.4
5,022,536	-		PFLU_RS22325	0.29	+1.1
5,022,536	-		PFLU_RS22325	0.29	-0.4
5,022,536	-		PFLU_RS22325	0.29	+0.6
5,022,536	-		PFLU_RS22325	0.29	-1.7
5,022,536	-		PFLU_RS22325	0.29	+0.6
5,022,536	-		PFLU_RS22325	0.29	+0.0
5,022,536	-		PFLU_RS22325	0.29	-0.7
5,022,536	-		PFLU_RS22325	0.29	-0.6
5,022,536	-		PFLU_RS22325	0.29	+1.6
5,022,536	-		PFLU_RS22325	0.29	+2.5
5,022,554	+		PFLU_RS22325	0.32	+0.2
5,022,554	+		PFLU_RS22325	0.32	-0.7
5,022,554	+		PFLU_RS22325	0.32	-0.7
5,022,554	+		PFLU_RS22325	0.32	+0.6
5,022,554	+		PFLU_RS22325	0.32	+0.0
5,022,555	-		PFLU_RS22325	0.32	-0.4
5,022,555	-		PFLU_RS22325	0.32	-2.3
5,022,555	-		PFLU_RS22325	0.32	+1.6
5,022,613	+		PFLU_RS22325	0.41	+0.3
5,022,613	+		PFLU_RS22325	0.41	+1.6
5,022,613	+		PFLU_RS22325	0.41	-1.0
5,022,703	+		PFLU_RS22325	0.56	+0.0
5,022,733	+		PFLU_RS22325	0.61	+2.8
5,022,733	+		PFLU_RS22325	0.61	+1.5
5,022,733	+		PFLU_RS22325	0.61	-1.6
5,022,733	+		PFLU_RS22325	0.61	+1.6
5,022,733	+		PFLU_RS22325	0.61	+1.6
5,022,733	+		PFLU_RS22325	0.61	+0.6
5,022,733	+		PFLU_RS22325	0.61	+0.6
5,022,734	-		PFLU_RS22325	0.61	-0.7
5,022,734	-		PFLU_RS22325	0.61	+1.2
5,022,734	-		PFLU_RS22325	0.61	-1.8
5,022,734	-		PFLU_RS22325	0.61	-0.7
5,022,734	-		PFLU_RS22325	0.61	-1.6
5,022,856	+		PFLU_RS22325	0.81	-0.7
5,022,856	+		PFLU_RS22325	0.81	+1.6
5,022,928	+				-0.7
5,022,929	-				-0.7
5,022,945	+				-1.6
5,023,039	-		PFLU_RS22330	0.33	+0.0
5,023,154	+				+2.1
5,023,178	-				+1.1
5,023,178	-				-0.4
5,023,178	-				+0.0
5,023,187	+				-2.3
5,023,187	+				+1.9
5,023,187	+				+1.0
5,023,187	+				-1.2
5,023,187	+				+1.6
5,023,187	+				+4.6
5,023,187	+				-1.2
5,023,188	-				+0.6
5,023,188	-				-1.7
5,023,201	+				+0.0
5,023,317	+		PFLU_RS22335	0.16	+0.4
5,023,317	+		PFLU_RS22335	0.16	+0.6
5,023,317	+		PFLU_RS22335	0.16	+0.6
5,023,317	+		PFLU_RS22335	0.16	-2.2
5,023,318	-		PFLU_RS22335	0.16	+1.9
5,023,318	-		PFLU_RS22335	0.16	-1.2
5,023,318	-		PFLU_RS22335	0.16	+2.2
5,023,318	-		PFLU_RS22335	0.16	+1.6
5,023,318	-		PFLU_RS22335	0.16	-1.4
5,023,318	-		PFLU_RS22335	0.16	-0.7
5,023,383	+		PFLU_RS22335	0.22	-1.4
5,023,395	+		PFLU_RS22335	0.24	-0.4
5,023,396	-		PFLU_RS22335	0.24	-1.0
5,023,434	+		PFLU_RS22335	0.28	-1.0
5,023,779	+		PFLU_RS22335	0.64	+2.0
5,023,779	+		PFLU_RS22335	0.64	+1.6
5,023,779	+		PFLU_RS22335	0.64	+1.6
5,023,779	+		PFLU_RS22335	0.64	-0.4
5,023,779	+		PFLU_RS22335	0.64	+0.0
5,023,779	+		PFLU_RS22335	0.64	-1.2
5,023,779	+		PFLU_RS22335	0.64	-1.7
5,023,780	-		PFLU_RS22335	0.64	-1.0
5,023,780	-		PFLU_RS22335	0.64	-1.2
5,023,780	-		PFLU_RS22335	0.64	+0.0
5,023,780	-		PFLU_RS22335	0.64	+0.6
5,023,780	-		PFLU_RS22335	0.64	-1.0
5,023,780	-		PFLU_RS22335	0.64	-2.1
5,023,780	-		PFLU_RS22335	0.64	-2.2
5,023,783	+		PFLU_RS22335	0.65	+1.6
5,023,783	+		PFLU_RS22335	0.65	-0.4
5,023,783	+		PFLU_RS22335	0.65	-1.0
5,023,783	+		PFLU_RS22335	0.65	+0.0
5,023,783	+		PFLU_RS22335	0.65	-1.6
5,023,783	+		PFLU_RS22335	0.65	-1.7
5,023,783	+		PFLU_RS22335	0.65	+0.9
5,023,783	+		PFLU_RS22335	0.65	-1.0
5,023,783	+		PFLU_RS22335	0.65	+1.6
5,023,783	+		PFLU_RS22335	0.65	-1.8
5,023,783	+		PFLU_RS22335	0.65	+0.0
5,023,783	+		PFLU_RS22335	0.65	+0.0
5,023,783	+		PFLU_RS22335	0.65	+0.8
5,023,784	-		PFLU_RS22335	0.65	+0.0
5,023,784	-		PFLU_RS22335	0.65	-1.0
5,023,784	-		PFLU_RS22335	0.65	+1.6
5,023,784	-		PFLU_RS22335	0.65	+2.8
5,023,784	-		PFLU_RS22335	0.65	-0.4
5,023,784	-		PFLU_RS22335	0.65	+3.2
5,023,784	-		PFLU_RS22335	0.65	+0.0
5,023,784	-		PFLU_RS22335	0.65	+0.6
5,023,784	-		PFLU_RS22335	0.65	+0.2
5,023,784	-		PFLU_RS22335	0.65	+0.0
5,023,784	-		PFLU_RS22335	0.65	+0.8
5,023,784	-		PFLU_RS22335	0.65	-1.0
5,023,784	-		PFLU_RS22335	0.65	-0.7
5,023,784	-		PFLU_RS22335	0.65	-1.1
5,023,784	-		PFLU_RS22335	0.65	-0.4
5,023,784	-		PFLU_RS22335	0.65	-0.4
5,023,941	+		PFLU_RS22335	0.81	-1.6
5,023,941	+		PFLU_RS22335	0.81	-1.7
5,023,941	+		PFLU_RS22335	0.81	+1.2
5,023,941	+		PFLU_RS22335	0.81	+0.6
5,023,941	+		PFLU_RS22335	0.81	-1.4
5,023,942	-		PFLU_RS22335	0.81	-1.2
5,023,942	-		PFLU_RS22335	0.81	-1.6
5,023,942	-		PFLU_RS22335	0.81	+0.6
5,023,942	-		PFLU_RS22335	0.81	-1.0
5,023,947	+		PFLU_RS22335	0.82	+3.9
5,023,947	+		PFLU_RS22335	0.82	-1.2
5,023,947	+		PFLU_RS22335	0.82	-1.0
5,023,947	+		PFLU_RS22335	0.82	-0.7
5,023,948	-		PFLU_RS22335	0.82	-1.7
5,023,948	-		PFLU_RS22335	0.82	+0.0
5,023,948	-		PFLU_RS22335	0.82	+0.6
5,023,948	-		PFLU_RS22335	0.82	+0.6
5,024,023	+				-2.6
5,024,023	+				+1.9
5,024,024	-				-0.4
5,024,024	-				-1.2
5,024,058	+				+1.4
5,024,058	+				-0.7
5,024,058	+				+2.8
5,024,058	+				+0.0
5,024,058	+				-0.7
5,024,058	+				+0.8
5,024,058	+				+1.6
5,024,058	+				-1.8
5,024,059	-				-1.2
5,024,059	-				+0.0
5,024,059	-				+0.6
5,024,059	-				+0.7
5,024,064	+				+1.6
5,024,064	+				+1.6
5,024,064	+				+0.6
5,024,064	+				-1.0
5,024,064	+				-2.0
5,024,064	+				+0.0
5,024,064	+				-0.7
5,024,064	+				-2.4
5,024,064	+				+0.4
5,024,064	+				+0.6
5,024,065	-				+1.6
5,024,065	-				+0.0
5,024,065	-				+1.0
5,024,065	-				-0.7
5,024,065	-				+0.0
5,024,066	+				+0.0
5,024,066	+				-0.4
5,024,066	+				-1.0
5,024,066	+				-1.8
5,024,066	+				+0.2
5,024,066	+				+0.0
5,024,066	+				-1.4
5,024,066	+				-0.1
5,024,066	+				-0.7
5,024,066	+				+1.6
5,024,066	+				+0.0
5,024,066	+				+0.0
5,024,066	+				-1.7
5,024,066	+				+0.8
5,024,066	+				+0.0
5,024,066	+				+0.0
5,024,066	+				+0.0
5,024,066	+				-0.7
5,024,066	+				-1.6
5,024,066	+				-0.6
5,024,066	+				-0.7
5,024,066	+				+1.6
5,024,066	+				-1.6
5,024,067	-				+0.0
5,024,067	-				+0.0
5,024,067	-				+1.6
5,024,067	-				-1.0
5,024,067	-				+1.3
5,024,067	-				+0.6
5,024,067	-				-0.4
5,024,067	-				+2.0
5,024,067	-				+1.9
5,024,067	-				-0.7
5,024,067	-				-0.1
5,024,067	-				+2.6
5,024,067	-				+1.3
5,024,067	-				-0.7
5,024,067	-				-1.7
5,024,067	-				-0.4
5,024,067	-				+1.6
5,024,067	-				+0.2
5,024,067	-				+0.9
5,024,067	-				-1.0
5,024,067	-				+0.0
5,024,067	-				-1.7
5,024,067	-				+2.8
5,024,067	-				+1.6
5,024,067	-				+0.4
5,024,067	-				+0.6
5,024,067	-				-2.1
5,024,067	-				+1.1
5,024,067	-				+0.6
5,024,067	-				-0.7
5,024,067	-				+0.6
5,024,067	-				-1.2
5,024,067	-				+1.6
5,024,067	-				-2.0
5,024,154	-				-0.1
5,024,154	-				-1.2
5,024,154	-				+0.5
5,024,271	+				+0.7
5,024,271	+				-0.6
5,024,271	+				-0.6
5,024,271	+				+0.0
5,024,271	+				-1.6
5,024,271	+				-0.2
5,024,271	+				+1.9
5,024,271	+				+0.6
5,024,272	-				-1.2
5,024,272	-				-0.0
5,024,272	-				+0.4
5,024,272	-				+0.0
5,024,272	-				+1.6
5,024,338	+				+1.4
5,024,339	-				-1.3
5,024,371	+				+0.4
5,024,371	+				+0.9
5,024,372	-				-0.7
5,024,376	-				+0.0
5,024,376	-				+0.8
5,024,402	+				-3.2
5,024,439	+				+1.6
5,024,439	+				+0.7
5,024,440	-				+0.3
5,024,445	+				-0.1
5,024,446	-				-0.7
5,024,446	-				+2.4
5,024,492	+				-0.9
5,024,492	+				+0.3
5,024,493	-				+0.0
5,024,493	-				-1.6
5,024,493	-				+0.4
5,024,493	-				-0.6
5,024,535	+				-2.8
5,024,535	+				+0.4
5,024,535	+				-0.6
5,024,536	-				-1.0
5,024,536	-				+0.3
5,024,536	-				+1.0
5,024,551	+				+0.3
5,024,555	+				-0.0
5,024,555	+				-3.5
5,024,557	+				-0.3
5,024,567	+				-2.3
5,024,567	+				+0.5
5,024,582	+				+2.0
5,024,582	+				+0.6
5,024,583	-				-0.4
5,024,583	-				+2.1
5,024,583	-				-0.2
5,024,583	-				-0.7
5,024,583	-				-0.9
5,024,583	-				-2.6
5,024,583	-				-1.7
5,024,583	-				+0.8
5,024,613	+				+2.1
5,024,613	+				+0.0
5,024,613	+				-2.4
5,024,613	+				+0.6
5,024,613	+				+1.5
5,024,613	+				-2.2
5,024,613	+				+0.1
5,024,613	+				-0.5
5,024,613	+				+0.4
5,024,613	+				-1.3
5,024,613	+				-1.1
5,024,614	-				-0.6
5,024,614	-				-2.5
5,024,614	-				-1.2
5,024,614	-				-1.7
5,024,614	-				-2.4
5,024,614	-				-2.8
5,024,614	-				-2.0
5,024,614	-				+1.3
5,024,614	-				+0.4
5,024,614	-				+1.7
5,024,615	+				-2.2
5,024,615	+				-0.8
5,024,615	+				+0.4
5,024,615	+				+0.6
5,024,615	+				-2.1
5,024,615	+				-0.6
5,024,615	+				-1.7
5,024,615	+				-0.0
5,024,615	+				+0.2
5,024,615	+				-0.6
5,024,615	+				-0.4
5,024,615	+				+0.1
5,024,615	+				+1.3
5,024,615	+				+0.2
5,024,615	+				-1.0
5,024,615	+				+1.4
5,024,615	+				-0.8
5,024,615	+				+0.9
5,024,615	+				-1.4
5,024,615	+				-2.2
5,024,615	+				-3.2
5,024,615	+				-0.8
5,024,615	+				-1.7
5,024,615	+				-0.6
5,024,615	+				-0.2
5,024,615	+				+0.3
5,024,615	+				-0.1
5,024,615	+				-0.3
5,024,615	+				-0.3
5,024,615	+				+2.8
5,024,615	+				+0.1
5,024,616	-				-0.4
5,024,616	-				-0.2
5,024,616	-				+1.1
5,024,616	-				+0.3
5,024,616	-				-0.6
5,024,616	-				-1.2
5,024,616	-				-0.0
5,024,616	-				+1.3
5,024,616	-				-2.4
5,024,616	-				+0.8
5,024,616	-				+0.0
5,024,616	-				-2.0
5,024,616	-				-2.0
5,024,616	-				-1.3
5,024,616	-				-0.4
5,024,616	-				+1.0
5,024,619	+				-0.3
5,024,619	+				-1.7
5,024,619	+				+0.6
5,024,619	+				+0.0
5,024,619	+				-0.5
5,024,619	+				-0.1
5,024,619	+				-0.6
5,024,619	+				-0.1
5,024,619	+				-1.4
5,024,619	+				-0.1
5,024,619	+				-0.2
5,024,619	+				+0.3
5,024,619	+				-0.5
5,024,619	+				+0.3
5,024,619	+				-0.3
5,024,619	+				+0.1
5,024,619	+				+0.4
5,024,619	+				+0.4
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