Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06226

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06225 and H281DRAFT_06226 are separated by 154 nucleotidesH281DRAFT_06226 and H281DRAFT_06227 are separated by 197 nucleotides H281DRAFT_06225: H281DRAFT_06225 - Anaerobic selenocysteine-containing dehydrogenase, at 2,028 to 3,905 _06225 H281DRAFT_06226: H281DRAFT_06226 - long-chain acyl-CoA synthetase, at 4,060 to 5,733 _06226 H281DRAFT_06227: H281DRAFT_06227 - Outer membrane protein (porin), at 5,931 to 7,106 _06227 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3.102 kb on + strand, within H281DRAFT_06225at 3.102 kb on + strand, within H281DRAFT_06225at 3.227 kb on + strand, within H281DRAFT_06225at 3.451 kb on - strand, within H281DRAFT_06225at 3.451 kb on - strand, within H281DRAFT_06225at 3.451 kb on - strand, within H281DRAFT_06225at 3.495 kb on + strand, within H281DRAFT_06225at 3.496 kb on - strand, within H281DRAFT_06225at 3.701 kb on + strand, within H281DRAFT_06225at 3.701 kb on + strand, within H281DRAFT_06225at 3.701 kb on + strand, within H281DRAFT_06225at 3.702 kb on - strand, within H281DRAFT_06225at 3.702 kb on - strand, within H281DRAFT_06225at 3.702 kb on - strand, within H281DRAFT_06225at 3.702 kb on - strand, within H281DRAFT_06225at 3.873 kb on + strandat 3.873 kb on + strandat 3.873 kb on + strandat 3.874 kb on - strandat 3.874 kb on - strandat 3.874 kb on - strandat 3.874 kb on - strandat 3.874 kb on - strandat 3.969 kb on - strandat 3.969 kb on - strandat 3.990 kb on + strandat 3.990 kb on + strandat 4.010 kb on + strandat 4.010 kb on + strandat 4.010 kb on + strandat 4.010 kb on + strandat 4.010 kb on + strandat 4.210 kb on + strandat 4.210 kb on + strandat 4.351 kb on + strand, within H281DRAFT_06226at 4.352 kb on - strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.379 kb on - strand, within H281DRAFT_06226at 4.379 kb on - strand, within H281DRAFT_06226at 4.380 kb on + strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.413 kb on + strand, within H281DRAFT_06226at 4.476 kb on + strand, within H281DRAFT_06226at 4.476 kb on + strand, within H281DRAFT_06226at 4.477 kb on - strand, within H281DRAFT_06226at 4.477 kb on - strand, within H281DRAFT_06226at 4.480 kb on - strand, within H281DRAFT_06226at 4.495 kb on - strand, within H281DRAFT_06226at 4.495 kb on - strand, within H281DRAFT_06226at 4.690 kb on + strand, within H281DRAFT_06226at 4.690 kb on + strand, within H281DRAFT_06226at 4.690 kb on + strand, within H281DRAFT_06226at 4.800 kb on + strand, within H281DRAFT_06226at 4.801 kb on - strand, within H281DRAFT_06226at 4.844 kb on - strand, within H281DRAFT_06226at 4.844 kb on - strand, within H281DRAFT_06226at 4.993 kb on + strand, within H281DRAFT_06226at 4.993 kb on + strand, within H281DRAFT_06226at 4.993 kb on + strand, within H281DRAFT_06226at 5.025 kb on + strand, within H281DRAFT_06226at 5.025 kb on + strand, within H281DRAFT_06226at 5.115 kb on + strand, within H281DRAFT_06226at 5.115 kb on + strand, within H281DRAFT_06226at 5.116 kb on - strand, within H281DRAFT_06226at 5.116 kb on - strandat 5.134 kb on + strand, within H281DRAFT_06226at 5.134 kb on + strand, within H281DRAFT_06226at 5.134 kb on + strand, within H281DRAFT_06226at 5.134 kb on + strand, within H281DRAFT_06226at 5.135 kb on - strand, within H281DRAFT_06226at 5.135 kb on - strand, within H281DRAFT_06226at 5.191 kb on + strand, within H281DRAFT_06226at 5.191 kb on + strand, within H281DRAFT_06226at 5.192 kb on - strand, within H281DRAFT_06226at 5.192 kb on - strand, within H281DRAFT_06226at 5.192 kb on - strand, within H281DRAFT_06226at 5.194 kb on - strand, within H281DRAFT_06226at 5.464 kb on + strand, within H281DRAFT_06226at 5.486 kb on + strand, within H281DRAFT_06226at 5.486 kb on + strand, within H281DRAFT_06226at 5.486 kb on + strand, within H281DRAFT_06226at 5.487 kb on - strand, within H281DRAFT_06226at 5.559 kb on + strand, within H281DRAFT_06226at 5.630 kb on + strandat 5.638 kb on + strandat 5.638 kb on + strandat 5.639 kb on - strandat 5.676 kb on - strandat 5.745 kb on + strandat 5.745 kb on + strandat 5.746 kb on - strandat 5.746 kb on - strandat 5.750 kb on + strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.877 kb on + strandat 5.923 kb on - strandat 5.929 kb on + strandat 5.929 kb on + strandat 5.929 kb on + strandat 5.929 kb on + strandat 5.930 kb on - strandat 5.932 kb on + strandat 5.932 kb on + strandat 6.030 kb on - strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.046 kb on - strandat 6.067 kb on + strand, within H281DRAFT_06227at 6.067 kb on + strand, within H281DRAFT_06227at 6.068 kb on - strandat 6.068 kb on - strand, within H281DRAFT_06227at 6.068 kb on - strand, within H281DRAFT_06227at 6.082 kb on + strand, within H281DRAFT_06227at 6.082 kb on + strand, within H281DRAFT_06227at 6.083 kb on - strandat 6.093 kb on - strand, within H281DRAFT_06227at 6.093 kb on - strand, within H281DRAFT_06227at 6.109 kb on + strand, within H281DRAFT_06227at 6.109 kb on + strand, within H281DRAFT_06227at 6.136 kb on + strand, within H281DRAFT_06227at 6.178 kb on + strand, within H281DRAFT_06227at 6.178 kb on + strand, within H281DRAFT_06227at 6.178 kb on + strand, within H281DRAFT_06227at 6.179 kb on - strand, within H281DRAFT_06227at 6.179 kb on - strand, within H281DRAFT_06227at 6.184 kb on + strand, within H281DRAFT_06227at 6.184 kb on + strand, within H281DRAFT_06227at 6.184 kb on + strand, within H281DRAFT_06227at 6.185 kb on - strand, within H281DRAFT_06227at 6.185 kb on - strand, within H281DRAFT_06227at 6.185 kb on - strand, within H281DRAFT_06227at 6.220 kb on + strand, within H281DRAFT_06227at 6.221 kb on - strand, within H281DRAFT_06227at 6.252 kb on - strand, within H281DRAFT_06227at 6.319 kb on + strand, within H281DRAFT_06227at 6.352 kb on + strand, within H281DRAFT_06227at 6.352 kb on + strand, within H281DRAFT_06227at 6.353 kb on - strand, within H281DRAFT_06227at 6.353 kb on - strand, within H281DRAFT_06227at 6.380 kb on - strand, within H281DRAFT_06227at 6.380 kb on - strand, within H281DRAFT_06227at 6.397 kb on + strand, within H281DRAFT_06227at 6.397 kb on + strand, within H281DRAFT_06227at 6.398 kb on - strand, within H281DRAFT_06227at 6.406 kb on + strand, within H281DRAFT_06227at 6.406 kb on + strand, within H281DRAFT_06227at 6.406 kb on + strand, within H281DRAFT_06227at 6.407 kb on - strand, within H281DRAFT_06227at 6.438 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.500 kb on - strand, within H281DRAFT_06227at 6.533 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.595 kb on + strand, within H281DRAFT_06227at 6.596 kb on - strand, within H281DRAFT_06227at 6.596 kb on - strand, within H281DRAFT_06227at 6.622 kb on + strand, within H281DRAFT_06227at 6.623 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.656 kb on + strand, within H281DRAFT_06227at 6.662 kb on - strand, within H281DRAFT_06227at 6.706 kb on + strand, within H281DRAFT_06227at 6.707 kb on - strand, within H281DRAFT_06227

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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3,102 + H281DRAFT_06225 0.57 +0.9
3,102 + H281DRAFT_06225 0.57 -2.7
3,227 + H281DRAFT_06225 0.64 +0.7
3,451 - H281DRAFT_06225 0.76 +1.2
3,451 - H281DRAFT_06225 0.76 +0.3
3,451 - H281DRAFT_06225 0.76 -0.8
3,495 + H281DRAFT_06225 0.78 +0.1
3,496 - H281DRAFT_06225 0.78 +1.0
3,701 + H281DRAFT_06225 0.89 +0.1
3,701 + H281DRAFT_06225 0.89 +0.2
3,701 + H281DRAFT_06225 0.89 -0.2
3,702 - H281DRAFT_06225 0.89 +0.6
3,702 - H281DRAFT_06225 0.89 +0.1
3,702 - H281DRAFT_06225 0.89 -0.2
3,702 - H281DRAFT_06225 0.89 -1.3
3,873 + +0.3
3,873 + -0.4
3,873 + +0.4
3,874 - -2.4
3,874 - -0.2
3,874 - -0.6
3,874 - +0.2
3,874 - +0.3
3,969 - -1.0
3,969 - -0.8
3,990 + +0.4
3,990 + +0.9
4,010 + +0.2
4,010 + +0.1
4,010 + +0.5
4,010 + +0.4
4,010 + +0.8
4,210 + +0.8
4,210 + +0.3
4,351 + H281DRAFT_06226 0.17 -1.8
4,352 - H281DRAFT_06226 0.17 +0.4
4,378 + H281DRAFT_06226 0.19 -1.2
4,378 + H281DRAFT_06226 0.19 -0.6
4,378 + H281DRAFT_06226 0.19 +0.3
4,378 + H281DRAFT_06226 0.19 -0.5
4,378 + H281DRAFT_06226 0.19 -0.1
4,379 - H281DRAFT_06226 0.19 +1.1
4,379 - H281DRAFT_06226 0.19 -0.1
4,380 + H281DRAFT_06226 0.19 -0.3
4,381 - H281DRAFT_06226 0.19 +1.2
4,381 - H281DRAFT_06226 0.19 +0.3
4,381 - H281DRAFT_06226 0.19 +0.5
4,381 - H281DRAFT_06226 0.19 +0.0
4,381 - H281DRAFT_06226 0.19 -1.6
4,381 - H281DRAFT_06226 0.19 +0.3
4,413 + H281DRAFT_06226 0.21 -0.3
4,476 + H281DRAFT_06226 0.25 -0.2
4,476 + H281DRAFT_06226 0.25 -0.8
4,477 - H281DRAFT_06226 0.25 -0.2
4,477 - H281DRAFT_06226 0.25 -0.7
4,480 - H281DRAFT_06226 0.25 -1.0
4,495 - H281DRAFT_06226 0.26 +0.3
4,495 - H281DRAFT_06226 0.26 +0.6
4,690 + H281DRAFT_06226 0.38 +0.2
4,690 + H281DRAFT_06226 0.38 -0.6
4,690 + H281DRAFT_06226 0.38 +2.0
4,800 + H281DRAFT_06226 0.44 +0.3
4,801 - H281DRAFT_06226 0.44 -0.0
4,844 - H281DRAFT_06226 0.47 +0.3
4,844 - H281DRAFT_06226 0.47 -0.2
4,993 + H281DRAFT_06226 0.56 +1.0
4,993 + H281DRAFT_06226 0.56 -0.5
4,993 + H281DRAFT_06226 0.56 +0.6
5,025 + H281DRAFT_06226 0.58 -0.6
5,025 + H281DRAFT_06226 0.58 -1.3
5,115 + H281DRAFT_06226 0.63 -0.3
5,115 + H281DRAFT_06226 0.63 +0.5
5,116 - H281DRAFT_06226 0.63 +0.1
5,116 - -1.0
5,134 + H281DRAFT_06226 0.64 -0.6
5,134 + H281DRAFT_06226 0.64 +0.4
5,134 + H281DRAFT_06226 0.64 -0.4
5,134 + H281DRAFT_06226 0.64 -0.4
5,135 - H281DRAFT_06226 0.64 +0.6
5,135 - H281DRAFT_06226 0.64 +0.3
5,191 + H281DRAFT_06226 0.68 -0.4
5,191 + H281DRAFT_06226 0.68 +1.6
5,192 - H281DRAFT_06226 0.68 -0.1
5,192 - H281DRAFT_06226 0.68 +0.6
5,192 - H281DRAFT_06226 0.68 +0.5
5,194 - H281DRAFT_06226 0.68 -0.1
5,464 + H281DRAFT_06226 0.84 +3.0
5,486 + H281DRAFT_06226 0.85 -2.5
5,486 + H281DRAFT_06226 0.85 -1.3
5,486 + H281DRAFT_06226 0.85 +1.6
5,487 - H281DRAFT_06226 0.85 +0.1
5,559 + H281DRAFT_06226 0.90 -0.0
5,630 + -0.5
5,638 + +0.6
5,638 + +0.1
5,639 - +0.3
5,676 - -0.9
5,745 + +0.1
5,745 + -0.3
5,746 - +0.0
5,746 - -0.8
5,750 + -0.8
5,751 - +0.5
5,751 - +0.0
5,751 - +0.1
5,877 + +0.5
5,923 - -0.1
5,929 + +1.3
5,929 + +0.1
5,929 + +0.1
5,929 + +0.0
5,930 - -1.7
5,932 + -0.8
5,932 + +0.0
6,030 - -0.1
6,045 + +0.2
6,045 + +0.2
6,046 - -0.1
6,067 + H281DRAFT_06227 0.12 -2.5
6,067 + H281DRAFT_06227 0.12 -0.2
6,068 - -0.3
6,068 - H281DRAFT_06227 0.12 +0.5
6,068 - H281DRAFT_06227 0.12 +0.0
6,082 + H281DRAFT_06227 0.13 +0.3
6,082 + H281DRAFT_06227 0.13 -1.4
6,083 - +0.4
6,093 - H281DRAFT_06227 0.14 +0.7
6,093 - H281DRAFT_06227 0.14 +1.0
6,109 + H281DRAFT_06227 0.15 +2.0
6,109 + H281DRAFT_06227 0.15 +0.9
6,136 + H281DRAFT_06227 0.17 +0.2
6,178 + H281DRAFT_06227 0.21 +0.8
6,178 + H281DRAFT_06227 0.21 +1.2
6,178 + H281DRAFT_06227 0.21 +1.2
6,179 - H281DRAFT_06227 0.21 -0.7
6,179 - H281DRAFT_06227 0.21 +0.9
6,184 + H281DRAFT_06227 0.22 +0.7
6,184 + H281DRAFT_06227 0.22 +0.6
6,184 + H281DRAFT_06227 0.22 -0.2
6,185 - H281DRAFT_06227 0.22 +0.9
6,185 - H281DRAFT_06227 0.22 -0.1
6,185 - H281DRAFT_06227 0.22 +0.7
6,220 + H281DRAFT_06227 0.25 +0.4
6,221 - H281DRAFT_06227 0.25 +1.6
6,252 - H281DRAFT_06227 0.27 +0.8
6,319 + H281DRAFT_06227 0.33 +0.0
6,352 + H281DRAFT_06227 0.36 -0.7
6,352 + H281DRAFT_06227 0.36 +0.8
6,353 - H281DRAFT_06227 0.36 -2.4
6,353 - H281DRAFT_06227 0.36 +0.6
6,380 - H281DRAFT_06227 0.38 -0.6
6,380 - H281DRAFT_06227 0.38 +0.7
6,397 + H281DRAFT_06227 0.40 +0.4
6,397 + H281DRAFT_06227 0.40 +1.1
6,398 - H281DRAFT_06227 0.40 -1.3
6,406 + H281DRAFT_06227 0.40 +0.6
6,406 + H281DRAFT_06227 0.40 -0.0
6,406 + H281DRAFT_06227 0.40 -0.4
6,407 - H281DRAFT_06227 0.40 +0.7
6,438 - H281DRAFT_06227 0.43 +0.7
6,486 - H281DRAFT_06227 0.47 -0.8
6,486 - H281DRAFT_06227 0.47 -0.1
6,486 - H281DRAFT_06227 0.47 +0.6
6,500 - H281DRAFT_06227 0.48 +0.4
6,533 - H281DRAFT_06227 0.51 +0.0
6,567 - H281DRAFT_06227 0.54 -2.3
6,567 - H281DRAFT_06227 0.54 +1.5
6,567 - H281DRAFT_06227 0.54 +1.1
6,567 - H281DRAFT_06227 0.54 +0.2
6,567 - H281DRAFT_06227 0.54 +0.1
6,567 - H281DRAFT_06227 0.54 -0.1
6,595 + H281DRAFT_06227 0.56 -0.3
6,596 - H281DRAFT_06227 0.57 -1.1
6,596 - H281DRAFT_06227 0.57 +0.2
6,622 + H281DRAFT_06227 0.59 +1.4
6,623 - H281DRAFT_06227 0.59 +1.1
6,638 - H281DRAFT_06227 0.60 +1.1
6,638 - H281DRAFT_06227 0.60 -0.6
6,638 - H281DRAFT_06227 0.60 +0.2
6,638 - H281DRAFT_06227 0.60 -0.5
6,638 - H281DRAFT_06227 0.60 -0.2
6,656 + H281DRAFT_06227 0.62 +0.5
6,662 - H281DRAFT_06227 0.62 +0.3
6,706 + H281DRAFT_06227 0.66 +1.0
6,707 - H281DRAFT_06227 0.66 +1.2

Or see this region's nucleotide sequence