Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06225

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06224 and H281DRAFT_06225 are separated by 614 nucleotidesH281DRAFT_06225 and H281DRAFT_06226 are separated by 154 nucleotides H281DRAFT_06224: H281DRAFT_06224 - hippurate hydrolase, at 433 to 1,413 _06224 H281DRAFT_06225: H281DRAFT_06225 - Anaerobic selenocysteine-containing dehydrogenase, at 2,028 to 3,905 _06225 H281DRAFT_06226: H281DRAFT_06226 - long-chain acyl-CoA synthetase, at 4,060 to 5,733 _06226 Position (kb) 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 1.104 kb on + strand, within H281DRAFT_06224at 1.195 kb on + strand, within H281DRAFT_06224at 1.196 kb on - strand, within H281DRAFT_06224at 1.258 kb on + strand, within H281DRAFT_06224at 1.258 kb on + strand, within H281DRAFT_06224at 1.259 kb on - strandat 1.440 kb on + strandat 1.468 kb on + strandat 1.468 kb on + strandat 1.468 kb on + strandat 1.641 kb on + strandat 1.641 kb on + strandat 1.641 kb on + strandat 1.644 kb on + strandat 1.645 kb on - strandat 1.645 kb on - strandat 1.645 kb on - strandat 1.645 kb on - strandat 1.645 kb on - strandat 1.647 kb on + strandat 1.647 kb on + strandat 1.648 kb on - strandat 1.666 kb on - strandat 1.727 kb on + strandat 1.728 kb on - strandat 1.776 kb on + strandat 1.776 kb on + strandat 1.898 kb on - strandat 1.971 kb on - strandat 2.119 kb on + strandat 2.151 kb on + strandat 2.152 kb on - strandat 2.152 kb on - strandat 2.152 kb on - strandat 2.157 kb on + strandat 2.157 kb on + strandat 2.213 kb on + strandat 2.214 kb on - strandat 2.277 kb on + strand, within H281DRAFT_06225at 2.278 kb on - strand, within H281DRAFT_06225at 2.278 kb on - strand, within H281DRAFT_06225at 2.278 kb on - strand, within H281DRAFT_06225at 2.279 kb on + strand, within H281DRAFT_06225at 2.279 kb on + strand, within H281DRAFT_06225at 2.279 kb on + strand, within H281DRAFT_06225at 2.279 kb on + strand, within H281DRAFT_06225at 2.280 kb on - strand, within H281DRAFT_06225at 2.280 kb on - strand, within H281DRAFT_06225at 2.283 kb on + strand, within H281DRAFT_06225at 2.283 kb on + strand, within H281DRAFT_06225at 2.284 kb on - strand, within H281DRAFT_06225at 2.334 kb on - strand, within H281DRAFT_06225at 2.334 kb on - strand, within H281DRAFT_06225at 2.556 kb on + strand, within H281DRAFT_06225at 2.556 kb on + strand, within H281DRAFT_06225at 2.556 kb on + strand, within H281DRAFT_06225at 2.556 kb on + strand, within H281DRAFT_06225at 2.556 kb on + strand, within H281DRAFT_06225at 2.557 kb on - strand, within H281DRAFT_06225at 2.557 kb on - strand, within H281DRAFT_06225at 2.557 kb on - strand, within H281DRAFT_06225at 2.679 kb on + strand, within H281DRAFT_06225at 2.715 kb on + strand, within H281DRAFT_06225at 2.715 kb on + strand, within H281DRAFT_06225at 2.716 kb on - strand, within H281DRAFT_06225at 2.716 kb on - strand, within H281DRAFT_06225at 2.716 kb on - strand, within H281DRAFT_06225at 2.716 kb on - strand, within H281DRAFT_06225at 2.716 kb on - strand, within H281DRAFT_06225at 2.716 kb on - strand, within H281DRAFT_06225at 2.913 kb on - strand, within H281DRAFT_06225at 2.913 kb on - strand, within H281DRAFT_06225at 2.988 kb on + strand, within H281DRAFT_06225at 2.988 kb on + strand, within H281DRAFT_06225at 2.989 kb on - strand, within H281DRAFT_06225at 2.989 kb on - strandat 2.989 kb on - strand, within H281DRAFT_06225at 2.990 kb on + strand, within H281DRAFT_06225at 2.990 kb on + strand, within H281DRAFT_06225at 2.991 kb on - strand, within H281DRAFT_06225at 3.102 kb on + strand, within H281DRAFT_06225at 3.102 kb on + strand, within H281DRAFT_06225at 3.227 kb on + strand, within H281DRAFT_06225at 3.451 kb on - strand, within H281DRAFT_06225at 3.451 kb on - strand, within H281DRAFT_06225at 3.451 kb on - strand, within H281DRAFT_06225at 3.495 kb on + strand, within H281DRAFT_06225at 3.496 kb on - strand, within H281DRAFT_06225at 3.701 kb on + strand, within H281DRAFT_06225at 3.701 kb on + strand, within H281DRAFT_06225at 3.701 kb on + strand, within H281DRAFT_06225at 3.702 kb on - strand, within H281DRAFT_06225at 3.702 kb on - strand, within H281DRAFT_06225at 3.702 kb on - strand, within H281DRAFT_06225at 3.702 kb on - strand, within H281DRAFT_06225at 3.873 kb on + strandat 3.873 kb on + strandat 3.873 kb on + strandat 3.874 kb on - strandat 3.874 kb on - strandat 3.874 kb on - strandat 3.874 kb on - strandat 3.874 kb on - strandat 3.969 kb on - strandat 3.969 kb on - strandat 3.990 kb on + strandat 3.990 kb on + strandat 4.010 kb on + strandat 4.010 kb on + strandat 4.010 kb on + strandat 4.010 kb on + strandat 4.010 kb on + strandat 4.210 kb on + strandat 4.210 kb on + strandat 4.351 kb on + strand, within H281DRAFT_06226at 4.352 kb on - strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.378 kb on + strand, within H281DRAFT_06226at 4.379 kb on - strand, within H281DRAFT_06226at 4.379 kb on - strand, within H281DRAFT_06226at 4.380 kb on + strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.381 kb on - strand, within H281DRAFT_06226at 4.413 kb on + strand, within H281DRAFT_06226at 4.476 kb on + strand, within H281DRAFT_06226at 4.476 kb on + strand, within H281DRAFT_06226at 4.477 kb on - strand, within H281DRAFT_06226at 4.477 kb on - strand, within H281DRAFT_06226at 4.480 kb on - strand, within H281DRAFT_06226at 4.495 kb on - strand, within H281DRAFT_06226at 4.495 kb on - strand, within H281DRAFT_06226at 4.690 kb on + strand, within H281DRAFT_06226at 4.690 kb on + strand, within H281DRAFT_06226at 4.690 kb on + strand, within H281DRAFT_06226at 4.800 kb on + strand, within H281DRAFT_06226at 4.801 kb on - strand, within H281DRAFT_06226at 4.844 kb on - strand, within H281DRAFT_06226at 4.844 kb on - strand, within H281DRAFT_06226

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,104 + H281DRAFT_06224 0.68 +0.2
1,195 + H281DRAFT_06224 0.78 -0.2
1,196 - H281DRAFT_06224 0.78 +0.2
1,258 + H281DRAFT_06224 0.84 +0.0
1,258 + H281DRAFT_06224 0.84 +0.1
1,259 - -0.6
1,440 + +1.7
1,468 + +0.2
1,468 + +0.3
1,468 + +0.6
1,641 + -0.4
1,641 + +0.3
1,641 + +0.7
1,644 + -0.6
1,645 - -0.0
1,645 - +0.6
1,645 - +0.7
1,645 - +0.3
1,645 - -0.3
1,647 + -0.1
1,647 + +0.4
1,648 - -0.6
1,666 - -0.4
1,727 + +0.5
1,728 - -0.1
1,776 + +0.9
1,776 + -0.4
1,898 - +0.2
1,971 - -0.7
2,119 + -0.7
2,151 + -0.6
2,152 - -0.7
2,152 - -0.8
2,152 - -0.4
2,157 + -0.5
2,157 + +0.7
2,213 + +0.3
2,214 - +0.1
2,277 + H281DRAFT_06225 0.13 +0.1
2,278 - H281DRAFT_06225 0.13 +0.1
2,278 - H281DRAFT_06225 0.13 +0.1
2,278 - H281DRAFT_06225 0.13 -0.2
2,279 + H281DRAFT_06225 0.13 +1.1
2,279 + H281DRAFT_06225 0.13 +0.1
2,279 + H281DRAFT_06225 0.13 +0.1
2,279 + H281DRAFT_06225 0.13 -0.7
2,280 - H281DRAFT_06225 0.13 +0.5
2,280 - H281DRAFT_06225 0.13 -0.1
2,283 + H281DRAFT_06225 0.14 +0.2
2,283 + H281DRAFT_06225 0.14 -0.2
2,284 - H281DRAFT_06225 0.14 +0.4
2,334 - H281DRAFT_06225 0.16 +0.4
2,334 - H281DRAFT_06225 0.16 +0.7
2,556 + H281DRAFT_06225 0.28 +0.9
2,556 + H281DRAFT_06225 0.28 +0.7
2,556 + H281DRAFT_06225 0.28 +0.3
2,556 + H281DRAFT_06225 0.28 -0.1
2,556 + H281DRAFT_06225 0.28 +0.0
2,557 - H281DRAFT_06225 0.28 +0.1
2,557 - H281DRAFT_06225 0.28 -0.6
2,557 - H281DRAFT_06225 0.28 +0.7
2,679 + H281DRAFT_06225 0.35 -0.1
2,715 + H281DRAFT_06225 0.37 +0.4
2,715 + H281DRAFT_06225 0.37 +0.3
2,716 - H281DRAFT_06225 0.37 -0.8
2,716 - H281DRAFT_06225 0.37 +0.7
2,716 - H281DRAFT_06225 0.37 +0.4
2,716 - H281DRAFT_06225 0.37 +0.6
2,716 - H281DRAFT_06225 0.37 +0.6
2,716 - H281DRAFT_06225 0.37 +0.1
2,913 - H281DRAFT_06225 0.47 +1.0
2,913 - H281DRAFT_06225 0.47 +0.4
2,988 + H281DRAFT_06225 0.51 +0.4
2,988 + H281DRAFT_06225 0.51 -0.3
2,989 - H281DRAFT_06225 0.51 +0.0
2,989 - -0.8
2,989 - H281DRAFT_06225 0.51 -1.7
2,990 + H281DRAFT_06225 0.51 +0.7
2,990 + H281DRAFT_06225 0.51 -0.2
2,991 - H281DRAFT_06225 0.51 -2.2
3,102 + H281DRAFT_06225 0.57 +0.9
3,102 + H281DRAFT_06225 0.57 -2.7
3,227 + H281DRAFT_06225 0.64 +0.7
3,451 - H281DRAFT_06225 0.76 +1.2
3,451 - H281DRAFT_06225 0.76 +0.3
3,451 - H281DRAFT_06225 0.76 -0.8
3,495 + H281DRAFT_06225 0.78 +0.1
3,496 - H281DRAFT_06225 0.78 +1.0
3,701 + H281DRAFT_06225 0.89 +0.1
3,701 + H281DRAFT_06225 0.89 +0.2
3,701 + H281DRAFT_06225 0.89 -0.2
3,702 - H281DRAFT_06225 0.89 +0.6
3,702 - H281DRAFT_06225 0.89 +0.1
3,702 - H281DRAFT_06225 0.89 -0.2
3,702 - H281DRAFT_06225 0.89 -1.3
3,873 + +0.3
3,873 + -0.4
3,873 + +0.4
3,874 - -2.4
3,874 - -0.2
3,874 - -0.6
3,874 - +0.2
3,874 - +0.3
3,969 - -1.0
3,969 - -0.8
3,990 + +0.4
3,990 + +0.9
4,010 + +0.2
4,010 + +0.1
4,010 + +0.5
4,010 + +0.4
4,010 + +0.8
4,210 + +0.8
4,210 + +0.3
4,351 + H281DRAFT_06226 0.17 -1.8
4,352 - H281DRAFT_06226 0.17 +0.4
4,378 + H281DRAFT_06226 0.19 -1.2
4,378 + H281DRAFT_06226 0.19 -0.6
4,378 + H281DRAFT_06226 0.19 +0.3
4,378 + H281DRAFT_06226 0.19 -0.5
4,378 + H281DRAFT_06226 0.19 -0.1
4,379 - H281DRAFT_06226 0.19 +1.1
4,379 - H281DRAFT_06226 0.19 -0.1
4,380 + H281DRAFT_06226 0.19 -0.3
4,381 - H281DRAFT_06226 0.19 +1.2
4,381 - H281DRAFT_06226 0.19 +0.3
4,381 - H281DRAFT_06226 0.19 +0.5
4,381 - H281DRAFT_06226 0.19 +0.0
4,381 - H281DRAFT_06226 0.19 -1.6
4,381 - H281DRAFT_06226 0.19 +0.3
4,413 + H281DRAFT_06226 0.21 -0.3
4,476 + H281DRAFT_06226 0.25 -0.2
4,476 + H281DRAFT_06226 0.25 -0.8
4,477 - H281DRAFT_06226 0.25 -0.2
4,477 - H281DRAFT_06226 0.25 -0.7
4,480 - H281DRAFT_06226 0.25 -1.0
4,495 - H281DRAFT_06226 0.26 +0.3
4,495 - H281DRAFT_06226 0.26 +0.6
4,690 + H281DRAFT_06226 0.38 +0.2
4,690 + H281DRAFT_06226 0.38 -0.6
4,690 + H281DRAFT_06226 0.38 +2.0
4,800 + H281DRAFT_06226 0.44 +0.3
4,801 - H281DRAFT_06226 0.44 -0.0
4,844 - H281DRAFT_06226 0.47 +0.3
4,844 - H281DRAFT_06226 0.47 -0.2

Or see this region's nucleotide sequence