Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05887

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05885 and H281DRAFT_05886 are separated by 2 nucleotidesH281DRAFT_05886 and H281DRAFT_05887 overlap by 4 nucleotidesH281DRAFT_05887 and H281DRAFT_05888 overlap by 8 nucleotides H281DRAFT_05885: H281DRAFT_05885 - dihydroxyacetone kinase DhaK subunit, at 23,455 to 24,444 _05885 H281DRAFT_05886: H281DRAFT_05886 - dihydroxyacetone kinase DhaL subunit, at 24,447 to 25,088 _05886 H281DRAFT_05887: H281DRAFT_05887 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 25,085 to 26,122 _05887 H281DRAFT_05888: H281DRAFT_05888 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 26,115 to 27,218 _05888 Position (kb) 25 26 27Strain fitness (log2 ratio) -1 0 1 2at 25.048 kb on + strandat 25.119 kb on + strandat 25.552 kb on - strand, within H281DRAFT_05887at 25.885 kb on + strand, within H281DRAFT_05887at 26.060 kb on - strandat 26.679 kb on - strand, within H281DRAFT_05888at 26.939 kb on + strand, within H281DRAFT_05888at 26.952 kb on - strand, within H281DRAFT_05888at 27.058 kb on - strand, within H281DRAFT_05888

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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25,048 + -0.8
25,119 + +2.4
25,552 - H281DRAFT_05887 0.45 -0.6
25,885 + H281DRAFT_05887 0.77 +0.8
26,060 - -0.2
26,679 - H281DRAFT_05888 0.51 +0.6
26,939 + H281DRAFT_05888 0.75 +0.9
26,952 - H281DRAFT_05888 0.76 +0.5
27,058 - H281DRAFT_05888 0.85 +0.3

Or see this region's nucleotide sequence