Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05258

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05257 and H281DRAFT_05258 are separated by 2 nucleotidesH281DRAFT_05258 and H281DRAFT_05259 are separated by 153 nucleotides H281DRAFT_05257: H281DRAFT_05257 - hypothetical protein, at 28 to 81 _05257 H281DRAFT_05258: H281DRAFT_05258 - 5S rRNA. Bacterial TSU, at 84 to 197 _05258 H281DRAFT_05259: H281DRAFT_05259 - transcriptional regulator, LysR family, at 351 to 1,346 _05259 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.260 kb on - strandat 0.352 kb on + strandat 0.457 kb on - strand, within H281DRAFT_05259at 0.530 kb on - strand, within H281DRAFT_05259at 0.562 kb on + strand, within H281DRAFT_05259at 0.639 kb on + strand, within H281DRAFT_05259at 0.677 kb on + strand, within H281DRAFT_05259at 0.765 kb on - strand, within H281DRAFT_05259at 0.833 kb on - strand, within H281DRAFT_05259at 0.852 kb on + strand, within H281DRAFT_05259at 0.853 kb on - strand, within H281DRAFT_05259at 0.866 kb on + strand, within H281DRAFT_05259at 0.966 kb on + strand, within H281DRAFT_05259at 1.030 kb on + strand, within H281DRAFT_05259at 1.030 kb on + strand, within H281DRAFT_05259at 1.030 kb on + strand, within H281DRAFT_05259at 1.031 kb on - strand, within H281DRAFT_05259at 1.031 kb on - strand, within H281DRAFT_05259at 1.056 kb on - strand, within H281DRAFT_05259at 1.061 kb on + strand, within H281DRAFT_05259at 1.132 kb on - strand, within H281DRAFT_05259at 1.153 kb on + strand, within H281DRAFT_05259at 1.169 kb on + strand, within H281DRAFT_05259

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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260 - -0.3
352 + -0.6
457 - H281DRAFT_05259 0.11 -0.4
530 - H281DRAFT_05259 0.18 +0.4
562 + H281DRAFT_05259 0.21 +0.2
639 + H281DRAFT_05259 0.29 +0.3
677 + H281DRAFT_05259 0.33 -2.2
765 - H281DRAFT_05259 0.42 -0.7
833 - H281DRAFT_05259 0.48 -0.2
852 + H281DRAFT_05259 0.50 +0.5
853 - H281DRAFT_05259 0.50 -1.5
866 + H281DRAFT_05259 0.52 +0.9
966 + H281DRAFT_05259 0.62 -0.0
1,030 + H281DRAFT_05259 0.68 +0.9
1,030 + H281DRAFT_05259 0.68 +0.4
1,030 + H281DRAFT_05259 0.68 -0.1
1,031 - H281DRAFT_05259 0.68 -0.1
1,031 - H281DRAFT_05259 0.68 +0.1
1,056 - H281DRAFT_05259 0.71 +0.3
1,061 + H281DRAFT_05259 0.71 -0.8
1,132 - H281DRAFT_05259 0.78 -0.4
1,153 + H281DRAFT_05259 0.81 -0.1
1,169 + H281DRAFT_05259 0.82 +1.3

Or see this region's nucleotide sequence