Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05156

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05155 and H281DRAFT_05156 are separated by 354 nucleotidesH281DRAFT_05156 and H281DRAFT_05157 are separated by 91 nucleotides H281DRAFT_05155: H281DRAFT_05155 - transcriptional regulator, GntR family, at 108,273 to 109,073 _05155 H281DRAFT_05156: H281DRAFT_05156 - nucleobase:cation symporter-1, NCS1 family, at 109,428 to 110,909 _05156 H281DRAFT_05157: H281DRAFT_05157 - allantoin racemase, at 111,001 to 111,828 _05157 Position (kb) 109 110 111Strain fitness (log2 ratio) -1 0 1 2at 109.014 kb on - strandat 109.014 kb on - strandat 109.038 kb on - strandat 109.038 kb on - strandat 109.533 kb on + strandat 109.626 kb on + strand, within H281DRAFT_05156at 109.627 kb on - strand, within H281DRAFT_05156at 109.860 kb on + strand, within H281DRAFT_05156at 110.068 kb on - strand, within H281DRAFT_05156at 110.152 kb on - strand, within H281DRAFT_05156at 110.617 kb on - strand, within H281DRAFT_05156at 110.718 kb on + strand, within H281DRAFT_05156at 110.890 kb on - strandat 111.647 kb on + strand, within H281DRAFT_05157at 111.816 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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109,014 - -0.1
109,014 - -0.2
109,038 - +0.1
109,038 - -1.1
109,533 + +0.0
109,626 + H281DRAFT_05156 0.13 +0.6
109,627 - H281DRAFT_05156 0.13 -0.6
109,860 + H281DRAFT_05156 0.29 -0.9
110,068 - H281DRAFT_05156 0.43 -0.3
110,152 - H281DRAFT_05156 0.49 -0.6
110,617 - H281DRAFT_05156 0.80 +0.3
110,718 + H281DRAFT_05156 0.87 -0.6
110,890 - +2.5
111,647 + H281DRAFT_05157 0.78 -0.1
111,816 - +0.9

Or see this region's nucleotide sequence