Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04418 and H281DRAFT_04419 are separated by 181 nucleotides H281DRAFT_04419 and H281DRAFT_04420 are separated by 110 nucleotides
H281DRAFT_04418: H281DRAFT_04418 - polyphosphate kinase, at 137,225 to 139,288
_04418
H281DRAFT_04419: H281DRAFT_04419 - Ppx/GppA phosphatase, at 139,470 to 141,116
_04419
H281DRAFT_04420: H281DRAFT_04420 - ornithine-acyl[acyl carrier protein] N-acyltransferase, at 141,227 to 142,039
_04420
Position (kb) 139
140
141
142 Strain fitness (log2 ratio) -2
-1
0
1 at 138.903 kb on + strand, within H281DRAFT_04418 at 139.009 kb on - strand, within H281DRAFT_04418 at 139.009 kb on - strand, within H281DRAFT_04418 at 139.313 kb on + strand at 139.349 kb on - strand at 139.363 kb on - strand at 139.381 kb on + strand at 139.388 kb on + strand at 139.416 kb on - strand at 139.416 kb on - strand at 139.416 kb on - strand at 139.487 kb on + strand at 139.488 kb on - strand at 139.488 kb on - strand at 139.488 kb on - strand at 139.488 kb on - strand at 139.613 kb on + strand at 139.613 kb on + strand at 140.217 kb on + strand, within H281DRAFT_04419 at 140.218 kb on - strand, within H281DRAFT_04419 at 140.391 kb on - strand, within H281DRAFT_04419 at 140.391 kb on - strand, within H281DRAFT_04419 at 140.391 kb on - strand, within H281DRAFT_04419 at 140.481 kb on + strand, within H281DRAFT_04419 at 140.523 kb on + strand, within H281DRAFT_04419 at 140.647 kb on - strand, within H281DRAFT_04419 at 140.773 kb on - strand, within H281DRAFT_04419 at 140.930 kb on - strand, within H281DRAFT_04419 at 141.042 kb on + strand at 141.102 kb on + strand at 141.141 kb on + strand at 141.167 kb on + strand at 141.168 kb on - strand at 141.360 kb on - strand, within H281DRAFT_04420 at 141.369 kb on + strand, within H281DRAFT_04420 at 141.369 kb on + strand, within H281DRAFT_04420 at 141.370 kb on - strand, within H281DRAFT_04420 at 141.476 kb on - strand, within H281DRAFT_04420 at 141.507 kb on + strand, within H281DRAFT_04420 at 141.574 kb on + strand, within H281DRAFT_04420 at 141.575 kb on - strand, within H281DRAFT_04420 at 141.575 kb on - strand, within H281DRAFT_04420 at 141.576 kb on + strand, within H281DRAFT_04420 at 141.577 kb on - strand, within H281DRAFT_04420 at 141.757 kb on - strand, within H281DRAFT_04420 at 141.757 kb on - strand, within H281DRAFT_04420 at 141.810 kb on + strand, within H281DRAFT_04420 at 142.018 kb on + strand at 142.019 kb on - strand at 142.019 kb on - strand at 142.085 kb on + strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.086 kb on - strand at 142.088 kb on + strand at 142.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 138,903 + H281DRAFT_04418 0.81 -0.1 139,009 - H281DRAFT_04418 0.86 +1.0 139,009 - H281DRAFT_04418 0.86 -0.2 139,313 + +0.4 139,349 - +0.0 139,363 - -0.7 139,381 + +1.4 139,388 + -0.0 139,416 - +0.8 139,416 - -1.8 139,416 - -0.8 139,487 + +0.5 139,488 - -0.1 139,488 - -0.1 139,488 - -0.2 139,488 - -0.6 139,613 + -0.8 139,613 + -0.2 140,217 + H281DRAFT_04419 0.45 -0.2 140,218 - H281DRAFT_04419 0.45 -2.3 140,391 - H281DRAFT_04419 0.56 -1.3 140,391 - H281DRAFT_04419 0.56 -2.3 140,391 - H281DRAFT_04419 0.56 -0.5 140,481 + H281DRAFT_04419 0.61 -0.8 140,523 + H281DRAFT_04419 0.64 -1.4 140,647 - H281DRAFT_04419 0.71 -0.2 140,773 - H281DRAFT_04419 0.79 -1.1 140,930 - H281DRAFT_04419 0.89 -1.0 141,042 + -0.7 141,102 + -1.0 141,141 + -0.1 141,167 + +0.9 141,168 - +0.4 141,360 - H281DRAFT_04420 0.16 +0.4 141,369 + H281DRAFT_04420 0.17 -0.8 141,369 + H281DRAFT_04420 0.17 -0.4 141,370 - H281DRAFT_04420 0.18 -1.0 141,476 - H281DRAFT_04420 0.31 -0.5 141,507 + H281DRAFT_04420 0.34 -0.6 141,574 + H281DRAFT_04420 0.43 +0.9 141,575 - H281DRAFT_04420 0.43 -2.0 141,575 - H281DRAFT_04420 0.43 -0.3 141,576 + H281DRAFT_04420 0.43 +0.3 141,577 - H281DRAFT_04420 0.43 -0.1 141,757 - H281DRAFT_04420 0.65 -2.1 141,757 - H281DRAFT_04420 0.65 -0.7 141,810 + H281DRAFT_04420 0.72 +0.4 142,018 + -1.6 142,019 - -0.5 142,019 - -0.5 142,085 + -0.0 142,086 - +0.5 142,086 - +0.4 142,086 - -0.4 142,088 + -0.2 142,088 + -0.2
Or see this region's nucleotide sequence