Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04367 and H281DRAFT_04368 are separated by 143 nucleotides H281DRAFT_04368 and H281DRAFT_04369 are separated by 369 nucleotides H281DRAFT_04369 and H281DRAFT_04370 are separated by 259 nucleotides
H281DRAFT_04367: H281DRAFT_04367 - beta-N-acetylhexosaminidase, at 83,773 to 84,801
_04367
H281DRAFT_04368: H281DRAFT_04368 - two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family, at 84,945 to 86,324
_04368
H281DRAFT_04369: H281DRAFT_04369 - Uncharacterized conserved protein YjbJ, UPF0337 family, at 86,694 to 86,900
_04369
H281DRAFT_04370: H281DRAFT_04370 - translation elongation factor P (EF-P), at 87,160 to 87,717
_04370
Position (kb) 84
85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2 at 84.060 kb on + strand, within H281DRAFT_04367 at 84.061 kb on - strand, within H281DRAFT_04367 at 84.094 kb on + strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.096 kb on + strand, within H281DRAFT_04367 at 84.164 kb on - strand, within H281DRAFT_04367 at 84.179 kb on + strand, within H281DRAFT_04367 at 84.180 kb on - strand, within H281DRAFT_04367 at 84.382 kb on + strand, within H281DRAFT_04367 at 84.382 kb on + strand, within H281DRAFT_04367 at 84.383 kb on - strand, within H281DRAFT_04367 at 84.670 kb on - strand, within H281DRAFT_04367 at 84.699 kb on + strand at 84.819 kb on + strand at 84.819 kb on + strand at 84.819 kb on + strand at 84.819 kb on + strand at 84.820 kb on - strand at 84.820 kb on - strand at 84.820 kb on - strand at 84.823 kb on + strand at 84.824 kb on - strand at 84.977 kb on - strand at 85.237 kb on + strand, within H281DRAFT_04368 at 85.237 kb on + strand, within H281DRAFT_04368 at 85.237 kb on + strand, within H281DRAFT_04368 at 85.237 kb on + strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.686 kb on - strand, within H281DRAFT_04368 at 85.686 kb on - strand at 85.689 kb on + strand, within H281DRAFT_04368 at 85.690 kb on - strand, within H281DRAFT_04368 at 85.690 kb on - strand, within H281DRAFT_04368 at 85.690 kb on - strand, within H281DRAFT_04368 at 85.844 kb on + strand, within H281DRAFT_04368 at 85.845 kb on - strand, within H281DRAFT_04368 at 85.861 kb on + strand, within H281DRAFT_04368 at 85.861 kb on + strand, within H281DRAFT_04368 at 85.961 kb on - strand, within H281DRAFT_04368 at 86.023 kb on + strand, within H281DRAFT_04368 at 86.024 kb on - strand, within H281DRAFT_04368 at 86.024 kb on - strand, within H281DRAFT_04368 at 86.288 kb on + strand at 86.289 kb on - strand at 86.289 kb on - strand at 86.340 kb on - strand at 86.340 kb on - strand at 86.341 kb on + strand at 86.341 kb on + strand at 86.341 kb on + strand at 86.341 kb on + strand at 86.342 kb on - strand at 86.355 kb on - strand at 86.414 kb on - strand at 86.414 kb on - strand at 86.544 kb on + strand at 86.545 kb on - strand at 86.545 kb on - strand at 86.545 kb on - strand at 86.618 kb on - strand at 86.618 kb on - strand at 86.641 kb on + strand at 86.641 kb on + strand at 86.670 kb on - strand at 86.727 kb on + strand, within H281DRAFT_04369 at 86.924 kb on + strand at 86.952 kb on + strand at 86.953 kb on - strand at 86.977 kb on + strand at 86.988 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 84,060 + H281DRAFT_04367 0.28 -0.1 84,061 - H281DRAFT_04367 0.28 -2.0 84,094 + H281DRAFT_04367 0.31 +0.0 84,095 - H281DRAFT_04367 0.31 -0.4 84,095 - H281DRAFT_04367 0.31 -0.2 84,095 - H281DRAFT_04367 0.31 -0.3 84,095 - H281DRAFT_04367 0.31 -0.6 84,095 - H281DRAFT_04367 0.31 +0.0 84,095 - H281DRAFT_04367 0.31 +0.2 84,096 + H281DRAFT_04367 0.31 +0.1 84,164 - H281DRAFT_04367 0.38 -0.4 84,179 + H281DRAFT_04367 0.39 +0.9 84,180 - H281DRAFT_04367 0.40 -0.9 84,382 + H281DRAFT_04367 0.59 -0.9 84,382 + H281DRAFT_04367 0.59 -0.1 84,383 - H281DRAFT_04367 0.59 -0.9 84,670 - H281DRAFT_04367 0.87 +0.1 84,699 + -0.2 84,819 + +0.2 84,819 + -0.1 84,819 + +0.0 84,819 + -0.2 84,820 - +0.8 84,820 - -0.2 84,820 - -0.3 84,823 + -0.2 84,824 - -2.3 84,977 - +1.1 85,237 + H281DRAFT_04368 0.21 -1.1 85,237 + H281DRAFT_04368 0.21 +0.7 85,237 + H281DRAFT_04368 0.21 +0.3 85,237 + H281DRAFT_04368 0.21 +0.9 85,238 - H281DRAFT_04368 0.21 +0.1 85,238 - H281DRAFT_04368 0.21 +1.5 85,238 - H281DRAFT_04368 0.21 +0.7 85,238 - H281DRAFT_04368 0.21 +0.4 85,238 - H281DRAFT_04368 0.21 +0.7 85,686 - H281DRAFT_04368 0.54 +1.1 85,686 - +0.3 85,689 + H281DRAFT_04368 0.54 +0.8 85,690 - H281DRAFT_04368 0.54 +0.2 85,690 - H281DRAFT_04368 0.54 +1.2 85,690 - H281DRAFT_04368 0.54 +1.2 85,844 + H281DRAFT_04368 0.65 +0.5 85,845 - H281DRAFT_04368 0.65 +1.0 85,861 + H281DRAFT_04368 0.66 +0.4 85,861 + H281DRAFT_04368 0.66 +0.8 85,961 - H281DRAFT_04368 0.74 +0.5 86,023 + H281DRAFT_04368 0.78 +1.0 86,024 - H281DRAFT_04368 0.78 +0.9 86,024 - H281DRAFT_04368 0.78 +0.5 86,288 + +1.4 86,289 - +1.0 86,289 - +0.7 86,340 - -0.7 86,340 - +0.4 86,341 + +1.1 86,341 + +1.0 86,341 + +1.0 86,341 + +0.4 86,342 - -0.5 86,355 - -0.8 86,414 - +0.6 86,414 - +2.1 86,544 + +0.9 86,545 - -0.1 86,545 - +0.4 86,545 - +0.1 86,618 - -1.7 86,618 - -0.9 86,641 + +1.3 86,641 + +0.6 86,670 - -0.1 86,727 + H281DRAFT_04369 0.16 +1.0 86,924 + +0.2 86,952 + +0.7 86,953 - +0.2 86,977 + +0.8 86,988 + +1.2
Or see this region's nucleotide sequence