Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03945

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03944 and H281DRAFT_03945 are separated by 182 nucleotidesH281DRAFT_03945 and H281DRAFT_03946 overlap by 4 nucleotidesH281DRAFT_03946 and H281DRAFT_03947 are separated by 87 nucleotides H281DRAFT_03944: H281DRAFT_03944 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 45,183 to 46,907 _03944 H281DRAFT_03945: H281DRAFT_03945 - cobalt-zinc-cadmium efflux system protein, at 47,090 to 48,382 _03945 H281DRAFT_03946: H281DRAFT_03946 - transcriptional regulator, ArsR family, at 48,379 to 48,747 _03946 H281DRAFT_03947: H281DRAFT_03947 - Tetratricopeptide repeat-containing protein, at 48,835 to 50,718 _03947 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.429 kb on + strand, within H281DRAFT_03944at 46.429 kb on + strand, within H281DRAFT_03944at 46.430 kb on - strand, within H281DRAFT_03944at 46.603 kb on + strand, within H281DRAFT_03944at 46.604 kb on - strand, within H281DRAFT_03944at 46.814 kb on + strandat 46.815 kb on - strandat 46.936 kb on + strandat 46.937 kb on - strandat 46.942 kb on - strandat 46.991 kb on + strandat 47.016 kb on - strandat 47.418 kb on + strand, within H281DRAFT_03945at 47.476 kb on + strand, within H281DRAFT_03945at 47.478 kb on + strand, within H281DRAFT_03945at 47.537 kb on - strand, within H281DRAFT_03945at 47.537 kb on - strandat 47.775 kb on + strand, within H281DRAFT_03945at 47.898 kb on + strand, within H281DRAFT_03945at 47.899 kb on - strand, within H281DRAFT_03945at 47.899 kb on - strand, within H281DRAFT_03945at 47.899 kb on - strand, within H281DRAFT_03945at 47.899 kb on - strand, within H281DRAFT_03945at 47.901 kb on - strand, within H281DRAFT_03945at 47.901 kb on - strand, within H281DRAFT_03945at 47.901 kb on - strand, within H281DRAFT_03945at 47.901 kb on - strand, within H281DRAFT_03945at 48.249 kb on - strand, within H281DRAFT_03945at 48.322 kb on + strandat 48.473 kb on + strand, within H281DRAFT_03946at 48.474 kb on - strand, within H281DRAFT_03946at 48.474 kb on - strand, within H281DRAFT_03946at 48.858 kb on + strandat 48.881 kb on + strandat 49.158 kb on + strand, within H281DRAFT_03947at 49.159 kb on - strand, within H281DRAFT_03947at 49.189 kb on + strand, within H281DRAFT_03947at 49.189 kb on + strand, within H281DRAFT_03947at 49.189 kb on + strand, within H281DRAFT_03947at 49.189 kb on + strand, within H281DRAFT_03947at 49.190 kb on - strand, within H281DRAFT_03947at 49.190 kb on - strand, within H281DRAFT_03947at 49.190 kb on - strand, within H281DRAFT_03947

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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46,429 + H281DRAFT_03944 0.72 +0.1
46,429 + H281DRAFT_03944 0.72 +0.3
46,430 - H281DRAFT_03944 0.72 -0.8
46,603 + H281DRAFT_03944 0.82 -1.6
46,604 - H281DRAFT_03944 0.82 +0.6
46,814 + +1.2
46,815 - -1.9
46,936 + +0.4
46,937 - +1.0
46,942 - +1.0
46,991 + +0.1
47,016 - +0.1
47,418 + H281DRAFT_03945 0.25 +0.3
47,476 + H281DRAFT_03945 0.30 +0.2
47,478 + H281DRAFT_03945 0.30 -0.2
47,537 - H281DRAFT_03945 0.35 -0.4
47,537 - -0.7
47,775 + H281DRAFT_03945 0.53 +0.6
47,898 + H281DRAFT_03945 0.62 -0.4
47,899 - H281DRAFT_03945 0.63 +0.8
47,899 - H281DRAFT_03945 0.63 +0.4
47,899 - H281DRAFT_03945 0.63 +0.2
47,899 - H281DRAFT_03945 0.63 +0.8
47,901 - H281DRAFT_03945 0.63 +0.2
47,901 - H281DRAFT_03945 0.63 +0.4
47,901 - H281DRAFT_03945 0.63 -0.9
47,901 - H281DRAFT_03945 0.63 +0.7
48,249 - H281DRAFT_03945 0.90 +0.2
48,322 + +0.6
48,473 + H281DRAFT_03946 0.25 +1.6
48,474 - H281DRAFT_03946 0.26 +0.5
48,474 - H281DRAFT_03946 0.26 -0.0
48,858 + +2.4
48,881 + +0.3
49,158 + H281DRAFT_03947 0.17 +0.6
49,159 - H281DRAFT_03947 0.17 +0.9
49,189 + H281DRAFT_03947 0.19 +0.5
49,189 + H281DRAFT_03947 0.19 -0.1
49,189 + H281DRAFT_03947 0.19 +0.3
49,189 + H281DRAFT_03947 0.19 +0.5
49,190 - H281DRAFT_03947 0.19 +0.4
49,190 - H281DRAFT_03947 0.19 +0.4
49,190 - H281DRAFT_03947 0.19 +0.2

Or see this region's nucleotide sequence